miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12007 3' -56 NC_003278.1 + 16 0.66 0.571062
Target:  5'- aCGAcuGCGCG-CGCCGGcgaaugagccGAUGCGGcCAg -3'
miRNA:   3'- aGCU--UGCGCaGUGGCU----------CUGCGCCuGU- -5'
12007 3' -56 NC_003278.1 + 5571 0.68 0.474909
Target:  5'- cUCGuAACGCugGUUGUCGAG-CGCGGACAc -3'
miRNA:   3'- -AGC-UUGCG--CAGUGGCUCuGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 8673 0.69 0.396711
Target:  5'- uUCG-GCGcCGcCACCGAgGACGCGGuGCGu -3'
miRNA:   3'- -AGCuUGC-GCaGUGGCU-CUGCGCC-UGU- -5'
12007 3' -56 NC_003278.1 + 8821 0.66 0.571062
Target:  5'- gCGAGCagucaGCGcCGCCGAGG-GCGGcCAg -3'
miRNA:   3'- aGCUUG-----CGCaGUGGCUCUgCGCCuGU- -5'
12007 3' -56 NC_003278.1 + 12216 0.67 0.527496
Target:  5'- gUGugUGaUGUCGCCGAcGAUGCGGAUg -3'
miRNA:   3'- aGCuuGC-GCAGUGGCU-CUGCGCCUGu -5'
12007 3' -56 NC_003278.1 + 12469 0.66 0.560074
Target:  5'- cCGuauuCGCGUCGCau-GACGCGGGu- -3'
miRNA:   3'- aGCuu--GCGCAGUGgcuCUGCGCCUgu -5'
12007 3' -56 NC_003278.1 + 13189 0.68 0.48419
Target:  5'- cCGAG-GCaUCGCCGAcgcgaccgucggcGGCGCGGGCGu -3'
miRNA:   3'- aGCUUgCGcAGUGGCU-------------CUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 13277 0.66 0.593184
Target:  5'- aCGAugGCcagcagGUcCGCCGGGGCGCugccguugcccuGGGCGg -3'
miRNA:   3'- aGCUugCG------CA-GUGGCUCUGCG------------CCUGU- -5'
12007 3' -56 NC_003278.1 + 13645 0.66 0.571062
Target:  5'- uUCGGugGCGUUGCgUGGGAgaaGCuGGGCAu -3'
miRNA:   3'- -AGCUugCGCAGUG-GCUCUg--CG-CCUGU- -5'
12007 3' -56 NC_003278.1 + 15780 0.69 0.415485
Target:  5'- aUCGGGCGCGUgugcgaaggCACCGcccAGAUcgcaGCGGACc -3'
miRNA:   3'- -AGCUUGCGCA---------GUGGC---UCUG----CGCCUGu -5'
12007 3' -56 NC_003278.1 + 16650 0.66 0.604301
Target:  5'- -aGAGCcuCGUCuCCGAGAgGUGGugGu -3'
miRNA:   3'- agCUUGc-GCAGuGGCUCUgCGCCugU- -5'
12007 3' -56 NC_003278.1 + 16732 0.69 0.38753
Target:  5'- cUCGAGCuCGUCGCgGuGACGUGcGACc -3'
miRNA:   3'- -AGCUUGcGCAGUGgCuCUGCGC-CUGu -5'
12007 3' -56 NC_003278.1 + 19616 0.71 0.31141
Target:  5'- cUGAGCcgGCGUUGCUGAGGCGCGuGCGc -3'
miRNA:   3'- aGCUUG--CGCAGUGGCUCUGCGCcUGU- -5'
12007 3' -56 NC_003278.1 + 20240 0.71 0.319279
Target:  5'- uUC-AGCGaGUCGCCGAGcAUGCGGAUg -3'
miRNA:   3'- -AGcUUGCgCAGUGGCUC-UGCGCCUGu -5'
12007 3' -56 NC_003278.1 + 20461 0.66 0.592074
Target:  5'- gCGcGGCGCGaucuucaaggacaUCGCCGGGcaguACGCGGugAc -3'
miRNA:   3'- aGC-UUGCGC-------------AGUGGCUC----UGCGCCugU- -5'
12007 3' -56 NC_003278.1 + 21419 0.71 0.296116
Target:  5'- gUCGAuCGCGgcgcCGCCGAcGCGCuGGACGg -3'
miRNA:   3'- -AGCUuGCGCa---GUGGCUcUGCG-CCUGU- -5'
12007 3' -56 NC_003278.1 + 21751 0.71 0.288691
Target:  5'- gUCGAugGUGauggccugCGCCGGGGCGCuGGCGc -3'
miRNA:   3'- -AGCUugCGCa-------GUGGCUCUGCGcCUGU- -5'
12007 3' -56 NC_003278.1 + 22190 1.09 0.0006
Target:  5'- aUCGAACGCGUCACCGAGACGCGGACAc -3'
miRNA:   3'- -AGCUUGCGCAGUGGCUCUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 22433 0.66 0.560074
Target:  5'- gUCGAcgGCGCugGUCAgguagcCCGucACGCGGGCGa -3'
miRNA:   3'- -AGCU--UGCG--CAGU------GGCucUGCGCCUGU- -5'
12007 3' -56 NC_003278.1 + 22739 0.66 0.592074
Target:  5'- gCGAACGCaGUUGgagcagcCCGaAGACGCuGGGCGa -3'
miRNA:   3'- aGCUUGCG-CAGU-------GGC-UCUGCG-CCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.