miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12007 5' -62.8 NC_003278.1 + 8729 0.66 0.297603
Target:  5'- cGCCGAUGGCaucgcuggcccgaagACCCUGgccgcccuCGGCGGcgCu- -3'
miRNA:   3'- -CGGCUGCCG---------------UGGGGC--------GCCGCCuaGcu -5'
12007 5' -62.8 NC_003278.1 + 31264 0.66 0.294736
Target:  5'- aGCC--CGGagcaGCCUgGCGGCGGGccUCGGg -3'
miRNA:   3'- -CGGcuGCCg---UGGGgCGCCGCCU--AGCU- -5'
12007 5' -62.8 NC_003278.1 + 27901 0.66 0.294736
Target:  5'- uGCCGcGCaGC-CCCUGCGGCGuauagcgguagcGAUCGu -3'
miRNA:   3'- -CGGC-UGcCGuGGGGCGCCGC------------CUAGCu -5'
12007 5' -62.8 NC_003278.1 + 15366 0.66 0.294736
Target:  5'- gGCCuGACGGCAgcagacauUCCUGCGuuGGAugcgUCGAa -3'
miRNA:   3'- -CGG-CUGCCGU--------GGGGCGCcgCCU----AGCU- -5'
12007 5' -62.8 NC_003278.1 + 21695 0.66 0.29189
Target:  5'- cGCCGGCgcucuugcccaGGuCGCCCagcauggccagcaGCGGCuGGUCGAa -3'
miRNA:   3'- -CGGCUG-----------CC-GUGGGg------------CGCCGcCUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 19186 0.66 0.280721
Target:  5'- cGCCGAUGGCgaaugaccugcaGCUgCGCGugcugcucaGCGcGAUCGAc -3'
miRNA:   3'- -CGGCUGCCG------------UGGgGCGC---------CGC-CUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 20937 0.66 0.280721
Target:  5'- uGCCGAUGGUGCCgaGCaugaaGCGGAcugCGAu -3'
miRNA:   3'- -CGGCUGCCGUGGggCGc----CGCCUa--GCU- -5'
12007 5' -62.8 NC_003278.1 + 10479 0.66 0.26724
Target:  5'- gGCCG--GGCGCCugauCUGCGGCGucUCGAg -3'
miRNA:   3'- -CGGCugCCGUGG----GGCGCCGCcuAGCU- -5'
12007 5' -62.8 NC_003278.1 + 12540 0.66 0.26724
Target:  5'- cGgUGGCGGCAUagaCCUGCaGGCGGGUgGu -3'
miRNA:   3'- -CgGCUGCCGUG---GGGCG-CCGCCUAgCu -5'
12007 5' -62.8 NC_003278.1 + 8880 0.66 0.26658
Target:  5'- cGCCaGCGGCAggucgaggcgagcUCCgGCGGCGacgaGGUCGGc -3'
miRNA:   3'- -CGGcUGCCGU-------------GGGgCGCCGC----CUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 11876 0.66 0.265264
Target:  5'- cGCUGcGCGGCAugguCCaCCGCggcgauggugccgaGGCGGAUCa- -3'
miRNA:   3'- -CGGC-UGCCGU----GG-GGCG--------------CCGCCUAGcu -5'
12007 5' -62.8 NC_003278.1 + 28656 0.66 0.260698
Target:  5'- cGCCcACaGGUACaCCCgGCGGUGGGUgacCGAg -3'
miRNA:   3'- -CGGcUG-CCGUG-GGG-CGCCGCCUA---GCU- -5'
12007 5' -62.8 NC_003278.1 + 5726 0.67 0.256836
Target:  5'- aGCCG-CGGCGCUggugCCGUugaagccgaucaucaGGCGG-UCGAg -3'
miRNA:   3'- -CGGCuGCCGUGG----GGCG---------------CCGCCuAGCU- -5'
12007 5' -62.8 NC_003278.1 + 26878 0.67 0.254287
Target:  5'- cGCCGA-GGCGCUgCGCGaUGGAgagaUCGAc -3'
miRNA:   3'- -CGGCUgCCGUGGgGCGCcGCCU----AGCU- -5'
12007 5' -62.8 NC_003278.1 + 6823 0.67 0.248007
Target:  5'- gGCCGGCGGCgagguagaGCUUCGCG-CGGGcuucgUCGGg -3'
miRNA:   3'- -CGGCUGCCG--------UGGGGCGCcGCCU-----AGCU- -5'
12007 5' -62.8 NC_003278.1 + 4822 0.67 0.248007
Target:  5'- cGCCu-CGGUACCCaggcugGCGGgGGAgUCGGu -3'
miRNA:   3'- -CGGcuGCCGUGGGg-----CGCCgCCU-AGCU- -5'
12007 5' -62.8 NC_003278.1 + 2247 0.67 0.235831
Target:  5'- aCCGACuuGGCcaGCCCCuccauagacaGCGGCGGcUCGu -3'
miRNA:   3'- cGGCUG--CCG--UGGGG----------CGCCGCCuAGCu -5'
12007 5' -62.8 NC_003278.1 + 22360 0.67 0.235831
Target:  5'- uGCCGGCGGUACCgaggaCCGagcCGaGCaGAUCGGu -3'
miRNA:   3'- -CGGCUGCCGUGG-----GGC---GC-CGcCUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 31630 0.67 0.234048
Target:  5'- gGgCGGCGGCGCCgCaggcuucaaccgggCGCGuccGCGGGUCGGc -3'
miRNA:   3'- -CgGCUGCCGUGG-G--------------GCGC---CGCCUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 33022 0.67 0.229933
Target:  5'- gGCCGAC---ACCgCGcCGGCGGAUUGGu -3'
miRNA:   3'- -CGGCUGccgUGGgGC-GCCGCCUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.