miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12007 5' -62.8 NC_003278.1 + 2247 0.67 0.235831
Target:  5'- aCCGACuuGGCcaGCCCCuccauagacaGCGGCGGcUCGu -3'
miRNA:   3'- cGGCUG--CCG--UGGGG----------CGCCGCCuAGCu -5'
12007 5' -62.8 NC_003278.1 + 4822 0.67 0.248007
Target:  5'- cGCCu-CGGUACCCaggcugGCGGgGGAgUCGGu -3'
miRNA:   3'- -CGGcuGCCGUGGGg-----CGCCgCCU-AGCU- -5'
12007 5' -62.8 NC_003278.1 + 5726 0.67 0.256836
Target:  5'- aGCCG-CGGCGCUggugCCGUugaagccgaucaucaGGCGG-UCGAg -3'
miRNA:   3'- -CGGCuGCCGUGG----GGCG---------------CCGCCuAGCU- -5'
12007 5' -62.8 NC_003278.1 + 6670 0.69 0.182296
Target:  5'- aGCCGGCGGUACgCgCGaaGCGG-UCGGg -3'
miRNA:   3'- -CGGCUGCCGUGgG-GCgcCGCCuAGCU- -5'
12007 5' -62.8 NC_003278.1 + 6823 0.67 0.248007
Target:  5'- gGCCGGCGGCgagguagaGCUUCGCG-CGGGcuucgUCGGg -3'
miRNA:   3'- -CGGCUGCCG--------UGGGGCGCcGCCU-----AGCU- -5'
12007 5' -62.8 NC_003278.1 + 7765 0.71 0.125494
Target:  5'- uGCUGGCGGCACUacggucgcaCCGcCGGCGuGAcCGAg -3'
miRNA:   3'- -CGGCUGCCGUGG---------GGC-GCCGC-CUaGCU- -5'
12007 5' -62.8 NC_003278.1 + 7884 0.69 0.159778
Target:  5'- uCCGACGGcCGCCCCGgaaCGGCaGAUggUGAa -3'
miRNA:   3'- cGGCUGCC-GUGGGGC---GCCGcCUA--GCU- -5'
12007 5' -62.8 NC_003278.1 + 8033 0.7 0.143603
Target:  5'- gGCCcauGAUGGCGCCggCCGUGGCGGuggUGGu -3'
miRNA:   3'- -CGG---CUGCCGUGG--GGCGCCGCCua-GCU- -5'
12007 5' -62.8 NC_003278.1 + 8463 0.67 0.22416
Target:  5'- gGCUGGCGaGCAacgagaCgCUGCGGCGGAagCGGg -3'
miRNA:   3'- -CGGCUGC-CGUg-----G-GGCGCCGCCUa-GCU- -5'
12007 5' -62.8 NC_003278.1 + 8729 0.66 0.297603
Target:  5'- cGCCGAUGGCaucgcuggcccgaagACCCUGgccgcccuCGGCGGcgCu- -3'
miRNA:   3'- -CGGCUGCCG---------------UGGGGC--------GCCGCCuaGcu -5'
12007 5' -62.8 NC_003278.1 + 8880 0.66 0.26658
Target:  5'- cGCCaGCGGCAggucgaggcgagcUCCgGCGGCGacgaGGUCGGc -3'
miRNA:   3'- -CGGcUGCCGU-------------GGGgCGCCGC----CUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 9025 0.74 0.076479
Target:  5'- uGCCGGCGGCACCgCCGagcaccagcgccUGGCGaacgcucgccaGAUCGAc -3'
miRNA:   3'- -CGGCUGCCGUGG-GGC------------GCCGC-----------CUAGCU- -5'
12007 5' -62.8 NC_003278.1 + 10479 0.66 0.26724
Target:  5'- gGCCG--GGCGCCugauCUGCGGCGucUCGAg -3'
miRNA:   3'- -CGGCugCCGUGG----GGCGCCGCcuAGCU- -5'
12007 5' -62.8 NC_003278.1 + 11802 0.7 0.151495
Target:  5'- cGCCu-CGGCACCaucgCCGCGGUGGAcCa- -3'
miRNA:   3'- -CGGcuGCCGUGG----GGCGCCGCCUaGcu -5'
12007 5' -62.8 NC_003278.1 + 11876 0.66 0.265264
Target:  5'- cGCUGcGCGGCAugguCCaCCGCggcgauggugccgaGGCGGAUCa- -3'
miRNA:   3'- -CGGC-UGCCGU----GG-GGCG--------------CCGCCUAGcu -5'
12007 5' -62.8 NC_003278.1 + 12118 0.73 0.085236
Target:  5'- cGCCGGCGGUACCaCCGaacucaucagcgaCGGCGGcauccgcaucGUCGGc -3'
miRNA:   3'- -CGGCUGCCGUGG-GGC-------------GCCGCC----------UAGCU- -5'
12007 5' -62.8 NC_003278.1 + 12540 0.66 0.26724
Target:  5'- cGgUGGCGGCAUagaCCUGCaGGCGGGUgGu -3'
miRNA:   3'- -CgGCUGCCGUG---GGGCG-CCGCCUAgCu -5'
12007 5' -62.8 NC_003278.1 + 13198 0.69 0.181819
Target:  5'- gGCUGACGGCcgaggcaucGCCgacgcgaCCGuCGGCGGcgCGGg -3'
miRNA:   3'- -CGGCUGCCG---------UGG-------GGC-GCCGCCuaGCU- -5'
12007 5' -62.8 NC_003278.1 + 13261 0.68 0.207577
Target:  5'- cGCCGACcGuCGCCCCGUcGCuGAUCGc -3'
miRNA:   3'- -CGGCUGcC-GUGGGGCGcCGcCUAGCu -5'
12007 5' -62.8 NC_003278.1 + 14226 0.74 0.072329
Target:  5'- cGCCGGCGGCGCgCC-CGGCGaGA-CGGc -3'
miRNA:   3'- -CGGCUGCCGUGgGGcGCCGC-CUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.