miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12009 5' -51 NC_003278.1 + 30164 0.66 0.845166
Target:  5'- cUGAAGGuUCAcAGCGCGAcgcuGCGCGc---- -3'
miRNA:   3'- -ACUUCC-AGU-UCGCGCU----UGCGUcaacc -5'
12009 5' -51 NC_003278.1 + 28790 0.66 0.826329
Target:  5'- aUGAcgcGGcCGAGCGCGucGCGCAGa--- -3'
miRNA:   3'- -ACUu--CCaGUUCGCGCu-UGCGUCaacc -5'
12009 5' -51 NC_003278.1 + 2282 0.67 0.785991
Target:  5'- -uGGGGUCGAGCGUuuaucUGCAGUcGGg -3'
miRNA:   3'- acUUCCAGUUCGCGcuu--GCGUCAaCC- -5'
12009 5' -51 NC_003278.1 + 21647 0.67 0.764689
Target:  5'- cGAAcGUCGguGGCGUGAuCGCAGggcgGGa -3'
miRNA:   3'- aCUUcCAGU--UCGCGCUuGCGUCaa--CC- -5'
12009 5' -51 NC_003278.1 + 19616 0.67 0.764689
Target:  5'- cUGAgccGGcGUUgcugAGGCGCGuGCGCAGUUGc -3'
miRNA:   3'- -ACU---UC-CAG----UUCGCGCuUGCGUCAACc -5'
12009 5' -51 NC_003278.1 + 15254 0.67 0.754897
Target:  5'- cGAcGGU--AGCGCGAACGCuggaaucacggucacGUUGGc -3'
miRNA:   3'- aCUuCCAguUCGCGCUUGCGu--------------CAACC- -5'
12009 5' -51 NC_003278.1 + 5562 0.68 0.741664
Target:  5'- cUGGuuGUCGAGCGCGGacacgucGCGCGGcUUGc -3'
miRNA:   3'- -ACUucCAGUUCGCGCU-------UGCGUC-AACc -5'
12009 5' -51 NC_003278.1 + 6637 0.68 0.708989
Target:  5'- --cAGGUCGuGUGCGAgcACGUAGUcGGc -3'
miRNA:   3'- acuUCCAGUuCGCGCU--UGCGUCAaCC- -5'
12009 5' -51 NC_003278.1 + 18100 0.69 0.651159
Target:  5'- aGAAGGUCAGGUccuCGAGCgGCGGcaccgGGg -3'
miRNA:   3'- aCUUCCAGUUCGc--GCUUG-CGUCaa---CC- -5'
12009 5' -51 NC_003278.1 + 26996 0.71 0.546746
Target:  5'- gGAGGGUCAAgGCGUGAGCGUc----- -3'
miRNA:   3'- aCUUCCAGUU-CGCGCUUGCGucaacc -5'
12009 5' -51 NC_003278.1 + 9047 0.71 0.546746
Target:  5'- cGAGGGuUCAccAGCGCGGggaacuguGCGgcCAGUUGGu -3'
miRNA:   3'- aCUUCC-AGU--UCGCGCU--------UGC--GUCAACC- -5'
12009 5' -51 NC_003278.1 + 20592 0.71 0.535393
Target:  5'- cGAGGGUCGc-CGCGAcC-CAGUUGGa -3'
miRNA:   3'- aCUUCCAGUucGCGCUuGcGUCAACC- -5'
12009 5' -51 NC_003278.1 + 18163 0.71 0.524124
Target:  5'- cUGGGcGUCAGGCGUuGACGCGGcUGGc -3'
miRNA:   3'- -ACUUcCAGUUCGCGcUUGCGUCaACC- -5'
12009 5' -51 NC_003278.1 + 9424 0.76 0.28514
Target:  5'- aGAAGGcUCAcGCGCuGGccucgGCGCAGUUGGc -3'
miRNA:   3'- aCUUCC-AGUuCGCG-CU-----UGCGUCAACC- -5'
12009 5' -51 NC_003278.1 + 22726 1.12 0.001036
Target:  5'- cUGAAGGUCAAGCGCGAACGCAGUUGGa -3'
miRNA:   3'- -ACUUCCAGUUCGCGCUUGCGUCAACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.