miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12010 3' -61.6 NC_003278.1 + 33915 0.66 0.290756
Target:  5'- uCCAcGCGG-CUGGUGUaGCCGCGgAa- -3'
miRNA:   3'- -GGU-CGCCgGACCGCGaCGGCGUgUag -5'
12010 3' -61.6 NC_003278.1 + 9576 0.66 0.290756
Target:  5'- --uGcCGGCCUGGCGggaaaGCUGgGCGUCg -3'
miRNA:   3'- gguC-GCCGGACCGCga---CGGCgUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 12505 0.66 0.290756
Target:  5'- gCCA-UGGCCcucauGCGCUGggaaCCGCGCAUCc -3'
miRNA:   3'- -GGUcGCCGGac---CGCGAC----GGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 30316 0.66 0.283547
Target:  5'- aCAGCGGCaccaccaGGCGCa---GCGCGUCg -3'
miRNA:   3'- gGUCGCCGga-----CCGCGacggCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 18915 0.66 0.276479
Target:  5'- --uGUGGCC--GCGaccaucaaaaucCUGCCGCGCAUCa -3'
miRNA:   3'- gguCGCCGGacCGC------------GACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 23086 0.66 0.269554
Target:  5'- gCGGuCGGCCUgcagguagcGGUGCUgGUCGC-CAUCc -3'
miRNA:   3'- gGUC-GCCGGA---------CCGCGA-CGGCGuGUAG- -5'
12010 3' -61.6 NC_003278.1 + 25329 0.66 0.269554
Target:  5'- -aAGCaGGUuucgUUGGCGCUGCUGCGgAUa -3'
miRNA:   3'- ggUCG-CCG----GACCGCGACGGCGUgUAg -5'
12010 3' -61.6 NC_003278.1 + 21464 0.66 0.26076
Target:  5'- cCCAG-GGCCUcGGCGCcggccaggccgGCCcgcugggcgugauuGCACGUCu -3'
miRNA:   3'- -GGUCgCCGGA-CCGCGa----------CGG--------------CGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 3466 0.66 0.256122
Target:  5'- gCCAGCGGUaUGGCGaUGCagaaGCGCu-- -3'
miRNA:   3'- -GGUCGCCGgACCGCgACGg---CGUGuag -5'
12010 3' -61.6 NC_003278.1 + 29107 0.67 0.249615
Target:  5'- gCCGGCuuGCUgcagGGCcUUGUCGCGCAUCu -3'
miRNA:   3'- -GGUCGc-CGGa---CCGcGACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 19627 0.67 0.249615
Target:  5'- uCCAgGCGGCCaaUGGCGCcaucaacaGCCagGCGCAg- -3'
miRNA:   3'- -GGU-CGCCGG--ACCGCGa-------CGG--CGUGUag -5'
12010 3' -61.6 NC_003278.1 + 10789 0.67 0.23701
Target:  5'- aCCGuGCGgaGCCUGGCGCUcCCGaa-GUCa -3'
miRNA:   3'- -GGU-CGC--CGGACCGCGAcGGCgugUAG- -5'
12010 3' -61.6 NC_003278.1 + 30383 0.67 0.23091
Target:  5'- aCGGCGuCCUGGCGCU-CCaggGC-CAUCg -3'
miRNA:   3'- gGUCGCcGGACCGCGAcGG---CGuGUAG- -5'
12010 3' -61.6 NC_003278.1 + 9045 0.67 0.23091
Target:  5'- aCCAGC-GCCUGGCGaacGCuCGcCAgAUCg -3'
miRNA:   3'- -GGUCGcCGGACCGCga-CG-GC-GUgUAG- -5'
12010 3' -61.6 NC_003278.1 + 2581 0.67 0.23091
Target:  5'- gCCGGCGGUauaggugaaCUGGCGCccaccgGCCGUGaugGUCu -3'
miRNA:   3'- -GGUCGCCG---------GACCGCGa-----CGGCGUg--UAG- -5'
12010 3' -61.6 NC_003278.1 + 12921 0.67 0.227313
Target:  5'- gCCAGCGcCCagGGCGCUgaccucgaccagcucGCCGCgaacuacaACGUCa -3'
miRNA:   3'- -GGUCGCcGGa-CCGCGA---------------CGGCG--------UGUAG- -5'
12010 3' -61.6 NC_003278.1 + 19366 0.67 0.227313
Target:  5'- gCGGCGcCCUGgagcaggucagcaccGCGCUgGCCGCGCAa- -3'
miRNA:   3'- gGUCGCcGGAC---------------CGCGA-CGGCGUGUag -5'
12010 3' -61.6 NC_003278.1 + 27923 0.67 0.224942
Target:  5'- -gGGCGGuCCUcgaggauGCGCuUGCCGCGCAg- -3'
miRNA:   3'- ggUCGCC-GGAc------CGCG-ACGGCGUGUag -5'
12010 3' -61.6 NC_003278.1 + 31517 0.67 0.219107
Target:  5'- gCCGGUGGaacGuGCGUUGCCGCAgaUAUCa -3'
miRNA:   3'- -GGUCGCCggaC-CGCGACGGCGU--GUAG- -5'
12010 3' -61.6 NC_003278.1 + 32160 0.68 0.211154
Target:  5'- -gGGCGGUCUGGCccagucgcggaagcGCUuccugcugguggcGCgGCACGUCg -3'
miRNA:   3'- ggUCGCCGGACCG--------------CGA-------------CGgCGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.