miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12010 3' -61.6 NC_003278.1 + 22974 1.11 0.000085
Target:  5'- gCCAGCGGCCUGGCGCUGCCGCACAUCa -3'
miRNA:   3'- -GGUCGCCGGACCGCGACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 15921 0.83 0.012758
Target:  5'- gCCGGCGGUcuguaCUGGCGCUGCCGCuACAa- -3'
miRNA:   3'- -GGUCGCCG-----GACCGCGACGGCG-UGUag -5'
12010 3' -61.6 NC_003278.1 + 21036 0.75 0.057232
Target:  5'- cCCGGUGGuCCUGGCaaUUGCCGC-CGUCg -3'
miRNA:   3'- -GGUCGCC-GGACCGc-GACGGCGuGUAG- -5'
12010 3' -61.6 NC_003278.1 + 34333 0.75 0.057232
Target:  5'- uCCAGCuacuGGCCccGGCGCUGCgCGCACu-- -3'
miRNA:   3'- -GGUCG----CCGGa-CCGCGACG-GCGUGuag -5'
12010 3' -61.6 NC_003278.1 + 28140 0.74 0.070069
Target:  5'- aCCAGgGGCUgucgaccagGGUGUagagcuccuuuuUGCCGCACGUCg -3'
miRNA:   3'- -GGUCgCCGGa--------CCGCG------------ACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 9666 0.74 0.072116
Target:  5'- gCCAGC-GCCUGGCGCaGCUGCuGCcgCu -3'
miRNA:   3'- -GGUCGcCGGACCGCGaCGGCG-UGuaG- -5'
12010 3' -61.6 NC_003278.1 + 14132 0.73 0.083002
Target:  5'- aCGGCGGCCUgcucaccgacaucGGCGCgGCagCGCugAUCg -3'
miRNA:   3'- gGUCGCCGGA-------------CCGCGaCG--GCGugUAG- -5'
12010 3' -61.6 NC_003278.1 + 5690 0.72 0.098752
Target:  5'- gCGGUcgagGGCCUGGCGCUugaggaucgcGUCGCGCAg- -3'
miRNA:   3'- gGUCG----CCGGACCGCGA----------CGGCGUGUag -5'
12010 3' -61.6 NC_003278.1 + 35515 0.71 0.116965
Target:  5'- gCCAGCaGGCUUGGCGggcGCUGCugGUg -3'
miRNA:   3'- -GGUCG-CCGGACCGCga-CGGCGugUAg -5'
12010 3' -61.6 NC_003278.1 + 19413 0.71 0.123704
Target:  5'- uCCAGgGcGCCgcgcugGGUGCggaagGCgCGCACGUCg -3'
miRNA:   3'- -GGUCgC-CGGa-----CCGCGa----CG-GCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 31620 0.7 0.130801
Target:  5'- gCuGCGGCCUGG-GCgGCgGCGCcgCa -3'
miRNA:   3'- gGuCGCCGGACCgCGaCGgCGUGuaG- -5'
12010 3' -61.6 NC_003278.1 + 13271 0.7 0.138272
Target:  5'- gCCAGCaGGuCCgccggGGCGCUGCCGUu---- -3'
miRNA:   3'- -GGUCG-CC-GGa----CCGCGACGGCGuguag -5'
12010 3' -61.6 NC_003278.1 + 8086 0.7 0.145731
Target:  5'- aCCugaaGGCCUGGUcgcgccuGCUGUCGCugAUCc -3'
miRNA:   3'- -GGucg-CCGGACCG-------CGACGGCGugUAG- -5'
12010 3' -61.6 NC_003278.1 + 12975 0.69 0.1544
Target:  5'- gUCAGCGcCCUgGGCGCUGgCCaGCAUGUUg -3'
miRNA:   3'- -GGUCGCcGGA-CCGCGAC-GG-CGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 19723 0.69 0.1544
Target:  5'- gCC-GCGGCauccaGaGCGCUGCCGCGCu-- -3'
miRNA:   3'- -GGuCGCCGga---C-CGCGACGGCGUGuag -5'
12010 3' -61.6 NC_003278.1 + 27380 0.69 0.16714
Target:  5'- gCGGCGGCUugcugcaUGGUGCUGCgGUA-GUCg -3'
miRNA:   3'- gGUCGCCGG-------ACCGCGACGgCGUgUAG- -5'
12010 3' -61.6 NC_003278.1 + 19969 0.69 0.171747
Target:  5'- aCAGCGGCagggugcgGGCcuGUUGCCGCagcgccuGCAUCu -3'
miRNA:   3'- gGUCGCCGga------CCG--CGACGGCG-------UGUAG- -5'
12010 3' -61.6 NC_003278.1 + 14291 0.69 0.176946
Target:  5'- gUCAGCcgucucGCCgGGCGC-GCCGCcgGCGUCa -3'
miRNA:   3'- -GGUCGc-----CGGaCCGCGaCGGCG--UGUAG- -5'
12010 3' -61.6 NC_003278.1 + 18941 0.68 0.181793
Target:  5'- gCAGCaGGUCgagcaGGUGCagGCCGCGCAguUCg -3'
miRNA:   3'- gGUCG-CCGGa----CCGCGa-CGGCGUGU--AG- -5'
12010 3' -61.6 NC_003278.1 + 13666 0.68 0.184757
Target:  5'- uUCGGCGGCCaGGCGCUcaaguucgguggcGuuGCgugggagaagcuggGCAUCa -3'
miRNA:   3'- -GGUCGCCGGaCCGCGA-------------CggCG--------------UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.