miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12010 3' -61.6 NC_003278.1 + 22974 1.11 0.000085
Target:  5'- gCCAGCGGCCUGGCGCUGCCGCACAUCa -3'
miRNA:   3'- -GGUCGCCGGACCGCGACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 2581 0.67 0.23091
Target:  5'- gCCGGCGGUauaggugaaCUGGCGCccaccgGCCGUGaugGUCu -3'
miRNA:   3'- -GGUCGCCG---------GACCGCGa-----CGGCGUg--UAG- -5'
12010 3' -61.6 NC_003278.1 + 9045 0.67 0.23091
Target:  5'- aCCAGC-GCCUGGCGaacGCuCGcCAgAUCg -3'
miRNA:   3'- -GGUCGcCGGACCGCga-CG-GC-GUgUAG- -5'
12010 3' -61.6 NC_003278.1 + 10789 0.67 0.23701
Target:  5'- aCCGuGCGgaGCCUGGCGCUcCCGaa-GUCa -3'
miRNA:   3'- -GGU-CGC--CGGACCGCGAcGGCgugUAG- -5'
12010 3' -61.6 NC_003278.1 + 19627 0.67 0.249615
Target:  5'- uCCAgGCGGCCaaUGGCGCcaucaacaGCCagGCGCAg- -3'
miRNA:   3'- -GGU-CGCCGG--ACCGCGa-------CGG--CGUGUag -5'
12010 3' -61.6 NC_003278.1 + 21464 0.66 0.26076
Target:  5'- cCCAG-GGCCUcGGCGCcggccaggccgGCCcgcugggcgugauuGCACGUCu -3'
miRNA:   3'- -GGUCgCCGGA-CCGCGa----------CGG--------------CGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 25329 0.66 0.269554
Target:  5'- -aAGCaGGUuucgUUGGCGCUGCUGCGgAUa -3'
miRNA:   3'- ggUCG-CCG----GACCGCGACGGCGUgUAg -5'
12010 3' -61.6 NC_003278.1 + 18915 0.66 0.276479
Target:  5'- --uGUGGCC--GCGaccaucaaaaucCUGCCGCGCAUCa -3'
miRNA:   3'- gguCGCCGGacCGC------------GACGGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 12505 0.66 0.290756
Target:  5'- gCCA-UGGCCcucauGCGCUGggaaCCGCGCAUCc -3'
miRNA:   3'- -GGUcGCCGGac---CGCGAC----GGCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 19366 0.67 0.227313
Target:  5'- gCGGCGcCCUGgagcaggucagcaccGCGCUgGCCGCGCAa- -3'
miRNA:   3'- gGUCGCcGGAC---------------CGCGA-CGGCGUGUag -5'
12010 3' -61.6 NC_003278.1 + 12921 0.67 0.227313
Target:  5'- gCCAGCGcCCagGGCGCUgaccucgaccagcucGCCGCgaacuacaACGUCa -3'
miRNA:   3'- -GGUCGCcGGa-CCGCGA---------------CGGCG--------UGUAG- -5'
12010 3' -61.6 NC_003278.1 + 15921 0.83 0.012758
Target:  5'- gCCGGCGGUcuguaCUGGCGCUGCCGCuACAa- -3'
miRNA:   3'- -GGUCGCCG-----GACCGCGACGGCG-UGUag -5'
12010 3' -61.6 NC_003278.1 + 21036 0.75 0.057232
Target:  5'- cCCGGUGGuCCUGGCaaUUGCCGC-CGUCg -3'
miRNA:   3'- -GGUCGCC-GGACCGc-GACGGCGuGUAG- -5'
12010 3' -61.6 NC_003278.1 + 34333 0.75 0.057232
Target:  5'- uCCAGCuacuGGCCccGGCGCUGCgCGCACu-- -3'
miRNA:   3'- -GGUCG----CCGGa-CCGCGACG-GCGUGuag -5'
12010 3' -61.6 NC_003278.1 + 14132 0.73 0.083002
Target:  5'- aCGGCGGCCUgcucaccgacaucGGCGCgGCagCGCugAUCg -3'
miRNA:   3'- gGUCGCCGGA-------------CCGCGaCG--GCGugUAG- -5'
12010 3' -61.6 NC_003278.1 + 31620 0.7 0.130801
Target:  5'- gCuGCGGCCUGG-GCgGCgGCGCcgCa -3'
miRNA:   3'- gGuCGCCGGACCgCGaCGgCGUGuaG- -5'
12010 3' -61.6 NC_003278.1 + 8086 0.7 0.145731
Target:  5'- aCCugaaGGCCUGGUcgcgccuGCUGUCGCugAUCc -3'
miRNA:   3'- -GGucg-CCGGACCG-------CGACGGCGugUAG- -5'
12010 3' -61.6 NC_003278.1 + 19723 0.69 0.1544
Target:  5'- gCC-GCGGCauccaGaGCGCUGCCGCGCu-- -3'
miRNA:   3'- -GGuCGCCGga---C-CGCGACGGCGUGuag -5'
12010 3' -61.6 NC_003278.1 + 32160 0.68 0.211154
Target:  5'- -gGGCGGUCUGGCccagucgcggaagcGCUuccugcugguggcGCgGCACGUCg -3'
miRNA:   3'- ggUCGCCGGACCG--------------CGA-------------CGgCGUGUAG- -5'
12010 3' -61.6 NC_003278.1 + 28140 0.74 0.070069
Target:  5'- aCCAGgGGCUgucgaccagGGUGUagagcuccuuuuUGCCGCACGUCg -3'
miRNA:   3'- -GGUCgCCGGa--------CCGCG------------ACGGCGUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.