miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12010 5' -58.4 NC_003278.1 + 5750 0.66 0.42054
Target:  5'- cGGGuUGGCGGCgCGGUuggugguaGCCGCgGCgCUGg -3'
miRNA:   3'- -UCCuACCGCUG-GUCG--------UGGCGaUG-GAC- -5'
12010 5' -58.4 NC_003278.1 + 5674 0.66 0.42054
Target:  5'- ----cGGC-ACCAGCGCCGCggcUACCa- -3'
miRNA:   3'- uccuaCCGcUGGUCGUGGCG---AUGGac -5'
12010 5' -58.4 NC_003278.1 + 18870 0.66 0.401517
Target:  5'- uGGcGAacUGcGCGGCCuGCACCuGCUcgACCUGc -3'
miRNA:   3'- -UC-CU--AC-CGCUGGuCGUGG-CGA--UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 8061 0.66 0.392214
Target:  5'- uGGcUGGCcACCGGCACgaaGCaggACCUGa -3'
miRNA:   3'- uCCuACCGcUGGUCGUGg--CGa--UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 4285 0.66 0.392214
Target:  5'- gAGGGUgGGCGG-CAGCAUcugcgccaugaaCGCUGCCg- -3'
miRNA:   3'- -UCCUA-CCGCUgGUCGUG------------GCGAUGGac -5'
12010 5' -58.4 NC_003278.1 + 8661 0.66 0.383051
Target:  5'- gAGGAcGGCcACUucGGCGCCGCcACCg- -3'
miRNA:   3'- -UCCUaCCGcUGG--UCGUGGCGaUGGac -5'
12010 5' -58.4 NC_003278.1 + 33292 0.67 0.365158
Target:  5'- cAGGGUGGUGcccaucacGCCGGCgauggccucgGCCGCaGCCg- -3'
miRNA:   3'- -UCCUACCGC--------UGGUCG----------UGGCGaUGGac -5'
12010 5' -58.4 NC_003278.1 + 32063 0.67 0.353841
Target:  5'- uGGcGAgccGCGGCCGGCACCuGCUggaccagaucaacaGCCUGc -3'
miRNA:   3'- -UC-CUac-CGCUGGUCGUGG-CGA--------------UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 21128 0.67 0.351265
Target:  5'- cAGGuacgcGGCGccgGCCAGCACCGCcacgacggcggcaauUGCCa- -3'
miRNA:   3'- -UCCua---CCGC---UGGUCGUGGCG---------------AUGGac -5'
12010 5' -58.4 NC_003278.1 + 19441 0.67 0.34785
Target:  5'- ---uUGcGCGGCCAGCGCgGUgcugACCUGc -3'
miRNA:   3'- uccuAC-CGCUGGUCGUGgCGa---UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 2897 0.67 0.34785
Target:  5'- -uGAUGGCGcuCCAGCACgCGgaACUUGc -3'
miRNA:   3'- ucCUACCGCu-GGUCGUG-GCgaUGGAC- -5'
12010 5' -58.4 NC_003278.1 + 31363 0.67 0.34785
Target:  5'- uGGGGUGGUuggcGCCAGggaguUGCCGCUcCCUGg -3'
miRNA:   3'- -UCCUACCGc---UGGUC-----GUGGCGAuGGAC- -5'
12010 5' -58.4 NC_003278.1 + 28251 0.67 0.339419
Target:  5'- cGGGUuccuugucGGUGGCCGGCgAUCGCUugCUc -3'
miRNA:   3'- uCCUA--------CCGCUGGUCG-UGGCGAugGAc -5'
12010 5' -58.4 NC_003278.1 + 9030 0.67 0.339419
Target:  5'- gGGGAacUGuGCGGCCAGUugguCgGCggugACCUGa -3'
miRNA:   3'- -UCCU--AC-CGCUGGUCGu---GgCGa---UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 5868 0.67 0.331137
Target:  5'- ----cGGCG-UCGGCGCCGUUGCCg- -3'
miRNA:   3'- uccuaCCGCuGGUCGUGGCGAUGGac -5'
12010 5' -58.4 NC_003278.1 + 13070 0.67 0.323004
Target:  5'- uGGGAaGGCc-UCAGCACCGCgggACCg- -3'
miRNA:   3'- -UCCUaCCGcuGGUCGUGGCGa--UGGac -5'
12010 5' -58.4 NC_003278.1 + 9672 0.67 0.3222
Target:  5'- cGGAUGGCcagcgccuGGCgCAGCugcuGCCGCUguuggucaggucgGCCUGg -3'
miRNA:   3'- uCCUACCG--------CUG-GUCG----UGGCGA-------------UGGAC- -5'
12010 5' -58.4 NC_003278.1 + 18889 0.68 0.30719
Target:  5'- cAGGGUGaGCGAUUcgauggacugGGCGCCGC-GCUUGa -3'
miRNA:   3'- -UCCUAC-CGCUGG----------UCGUGGCGaUGGAC- -5'
12010 5' -58.4 NC_003278.1 + 13237 0.68 0.299507
Target:  5'- ----gGGCGGCCuGCACCGUcACCa- -3'
miRNA:   3'- uccuaCCGCUGGuCGUGGCGaUGGac -5'
12010 5' -58.4 NC_003278.1 + 9607 0.68 0.299507
Target:  5'- cGGGAaagGGCGGCCucgAGgGCCGUgauggugccgGCCUGg -3'
miRNA:   3'- -UCCUa--CCGCUGG---UCgUGGCGa---------UGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.