miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12011 3' -62 NC_003278.1 + 21529 0.66 0.282877
Target:  5'- gUCAGC-GCGgGC-CGUCAGGcugucGCCGGc -3'
miRNA:   3'- -AGUCGaUGCgCGaGCGGUCCc----CGGCC- -5'
12011 3' -62 NC_003278.1 + 31789 0.66 0.275918
Target:  5'- cCGGCcAgGCGCUCgaaGUCGcGGaGGCCGGc -3'
miRNA:   3'- aGUCGaUgCGCGAG---CGGU-CC-CCGGCC- -5'
12011 3' -62 NC_003278.1 + 16945 0.66 0.275918
Target:  5'- -aGGCUGcCGCGCgCGCggcgaAGGGGCgaggCGGg -3'
miRNA:   3'- agUCGAU-GCGCGaGCGg----UCCCCG----GCC- -5'
12011 3' -62 NC_003278.1 + 32114 0.66 0.269096
Target:  5'- cCGGCcGCG-GCUCGCCAGacGCgGGa -3'
miRNA:   3'- aGUCGaUGCgCGAGCGGUCccCGgCC- -5'
12011 3' -62 NC_003278.1 + 21558 0.66 0.269096
Target:  5'- cUUGGCcgagACGUGCaaucaCGcCCAGcGGGCCGGc -3'
miRNA:   3'- -AGUCGa---UGCGCGa----GC-GGUC-CCCGGCC- -5'
12011 3' -62 NC_003278.1 + 6962 0.67 0.243166
Target:  5'- -gAGCguacccCGCGCccCGCCGgcuGGGGCCGa -3'
miRNA:   3'- agUCGau----GCGCGa-GCGGU---CCCCGGCc -5'
12011 3' -62 NC_003278.1 + 19360 0.67 0.22745
Target:  5'- -gAGCUGCuucagGCGCUCGCgAGuugccuugagcgcccGGGCCGu -3'
miRNA:   3'- agUCGAUG-----CGCGAGCGgUC---------------CCCGGCc -5'
12011 3' -62 NC_003278.1 + 7267 0.67 0.22511
Target:  5'- cCGGCUAUGCcgaaCUCGcCCAGGuGCCGu -3'
miRNA:   3'- aGUCGAUGCGc---GAGC-GGUCCcCGGCc -5'
12011 3' -62 NC_003278.1 + 9603 0.67 0.22511
Target:  5'- aCAGCgGCaGCaGCUgCGCCAGGcGCUGGc -3'
miRNA:   3'- aGUCGaUG-CG-CGA-GCGGUCCcCGGCC- -5'
12011 3' -62 NC_003278.1 + 27233 0.67 0.22511
Target:  5'- cCAGCaUugGcCGCUCgagGCCcgAGGGGCUGa -3'
miRNA:   3'- aGUCG-AugC-GCGAG---CGG--UCCCCGGCc -5'
12011 3' -62 NC_003278.1 + 34262 0.67 0.22511
Target:  5'- -gAGCUAUgGC-CUCGCUgacgcGGGGGCCGc -3'
miRNA:   3'- agUCGAUG-CGcGAGCGG-----UCCCCGGCc -5'
12011 3' -62 NC_003278.1 + 3067 0.68 0.213714
Target:  5'- uUCGcGCUGCG-GCcguucggugaUCGCCAGGuguGGCUGGg -3'
miRNA:   3'- -AGU-CGAUGCgCG----------AGCGGUCC---CCGGCC- -5'
12011 3' -62 NC_003278.1 + 22398 0.68 0.208204
Target:  5'- cCAGUUGCaGCGCgaCGCCGGcuauccGGuGCCGGu -3'
miRNA:   3'- aGUCGAUG-CGCGa-GCGGUC------CC-CGGCC- -5'
12011 3' -62 NC_003278.1 + 26659 0.69 0.182466
Target:  5'- gCGGCgcauuCGCGUcCGCCAGGGuaggcGCCGa -3'
miRNA:   3'- aGUCGau---GCGCGaGCGGUCCC-----CGGCc -5'
12011 3' -62 NC_003278.1 + 22934 0.7 0.151177
Target:  5'- cCGGCUGCcUGCUCuGCCuGcGGCCGGu -3'
miRNA:   3'- aGUCGAUGcGCGAG-CGGuCcCCGGCC- -5'
12011 3' -62 NC_003278.1 + 11877 0.7 0.143176
Target:  5'- -uGGCUGCcuuGgGCaUCGCCGcGGGCCGGc -3'
miRNA:   3'- agUCGAUG---CgCG-AGCGGUcCCCGGCC- -5'
12011 3' -62 NC_003278.1 + 2778 0.71 0.128324
Target:  5'- cCAGCUGCGCGa-CGCCAGaGcccauGCCGGu -3'
miRNA:   3'- aGUCGAUGCGCgaGCGGUC-Cc----CGGCC- -5'
12011 3' -62 NC_003278.1 + 34400 0.71 0.12484
Target:  5'- gCAG-UGCGCGCagCGCC-GGGGCCa- -3'
miRNA:   3'- aGUCgAUGCGCGa-GCGGuCCCCGGcc -5'
12011 3' -62 NC_003278.1 + 9104 0.72 0.108702
Target:  5'- -uGGCga-GCGUUCGCCAGGcGCUGGu -3'
miRNA:   3'- agUCGaugCGCGAGCGGUCCcCGGCC- -5'
12011 3' -62 NC_003278.1 + 20744 0.74 0.069292
Target:  5'- -gAGCU-CGCGCa-GCCAGGGGCUGu -3'
miRNA:   3'- agUCGAuGCGCGagCGGUCCCCGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.