Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12011 | 3' | -62 | NC_003278.1 | + | 23232 | 1.09 | 0.000131 |
Target: 5'- cUCAGCUACGCGCUCGCCAGGGGCCGGc -3' miRNA: 3'- -AGUCGAUGCGCGAGCGGUCCCCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 20744 | 0.74 | 0.069292 |
Target: 5'- -gAGCU-CGCGCa-GCCAGGGGCUGu -3' miRNA: 3'- agUCGAuGCGCGagCGGUCCCCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 9104 | 0.72 | 0.108702 |
Target: 5'- -uGGCga-GCGUUCGCCAGGcGCUGGu -3' miRNA: 3'- agUCGaugCGCGAGCGGUCCcCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 34400 | 0.71 | 0.12484 |
Target: 5'- gCAG-UGCGCGCagCGCC-GGGGCCa- -3' miRNA: 3'- aGUCgAUGCGCGa-GCGGuCCCCGGcc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 2778 | 0.71 | 0.128324 |
Target: 5'- cCAGCUGCGCGa-CGCCAGaGcccauGCCGGu -3' miRNA: 3'- aGUCGAUGCGCgaGCGGUC-Cc----CGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 11877 | 0.7 | 0.143176 |
Target: 5'- -uGGCUGCcuuGgGCaUCGCCGcGGGCCGGc -3' miRNA: 3'- agUCGAUG---CgCG-AGCGGUcCCCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 22934 | 0.7 | 0.151177 |
Target: 5'- cCGGCUGCcUGCUCuGCCuGcGGCCGGu -3' miRNA: 3'- aGUCGAUGcGCGAG-CGGuCcCCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 26659 | 0.69 | 0.182466 |
Target: 5'- gCGGCgcauuCGCGUcCGCCAGGGuaggcGCCGa -3' miRNA: 3'- aGUCGau---GCGCGaGCGGUCCC-----CGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 22398 | 0.68 | 0.208204 |
Target: 5'- cCAGUUGCaGCGCgaCGCCGGcuauccGGuGCCGGu -3' miRNA: 3'- aGUCGAUG-CGCGa-GCGGUC------CC-CGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 3067 | 0.68 | 0.213714 |
Target: 5'- uUCGcGCUGCG-GCcguucggugaUCGCCAGGuguGGCUGGg -3' miRNA: 3'- -AGU-CGAUGCgCG----------AGCGGUCC---CCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 34262 | 0.67 | 0.22511 |
Target: 5'- -gAGCUAUgGC-CUCGCUgacgcGGGGGCCGc -3' miRNA: 3'- agUCGAUG-CGcGAGCGG-----UCCCCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 19360 | 0.67 | 0.22745 |
Target: 5'- -gAGCUGCuucagGCGCUCGCgAGuugccuugagcgcccGGGCCGu -3' miRNA: 3'- agUCGAUG-----CGCGAGCGgUC---------------CCCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 7267 | 0.67 | 0.22511 |
Target: 5'- cCGGCUAUGCcgaaCUCGcCCAGGuGCCGu -3' miRNA: 3'- aGUCGAUGCGc---GAGC-GGUCCcCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 9603 | 0.67 | 0.22511 |
Target: 5'- aCAGCgGCaGCaGCUgCGCCAGGcGCUGGc -3' miRNA: 3'- aGUCGaUG-CG-CGA-GCGGUCCcCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 6962 | 0.67 | 0.243166 |
Target: 5'- -gAGCguacccCGCGCccCGCCGgcuGGGGCCGa -3' miRNA: 3'- agUCGau----GCGCGa-GCGGU---CCCCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 27233 | 0.67 | 0.22511 |
Target: 5'- cCAGCaUugGcCGCUCgagGCCcgAGGGGCUGa -3' miRNA: 3'- aGUCG-AugC-GCGAG---CGG--UCCCCGGCc -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 21558 | 0.66 | 0.269096 |
Target: 5'- cUUGGCcgagACGUGCaaucaCGcCCAGcGGGCCGGc -3' miRNA: 3'- -AGUCGa---UGCGCGa----GC-GGUC-CCCGGCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 32114 | 0.66 | 0.269096 |
Target: 5'- cCGGCcGCG-GCUCGCCAGacGCgGGa -3' miRNA: 3'- aGUCGaUGCgCGAGCGGUCccCGgCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 16945 | 0.66 | 0.275918 |
Target: 5'- -aGGCUGcCGCGCgCGCggcgaAGGGGCgaggCGGg -3' miRNA: 3'- agUCGAU-GCGCGaGCGg----UCCCCG----GCC- -5' |
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12011 | 3' | -62 | NC_003278.1 | + | 21529 | 0.66 | 0.282877 |
Target: 5'- gUCAGC-GCGgGC-CGUCAGGcugucGCCGGc -3' miRNA: 3'- -AGUCGaUGCgCGaGCGGUCCc----CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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