miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12012 5' -60.5 NC_003278.1 + 17227 0.66 0.343666
Target:  5'- -gGCggCGuuGGCCUGGUCGGCGAUUg -3'
miRNA:   3'- gaCGg-GCucCUGGACCAGUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 7795 0.66 0.335474
Target:  5'- -cGCCuCGAcGGugucGCuCUGGUUAGCGAUCa -3'
miRNA:   3'- gaCGG-GCU-CC----UG-GACCAGUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 22060 0.66 0.335474
Target:  5'- cCUGCCCGGcgugcugcugccGGAgCUGGccggCAGCGcguugaGCCUg -3'
miRNA:   3'- -GACGGGCU------------CCUgGACCa---GUCGC------UGGA- -5'
12012 5' -60.5 NC_003278.1 + 18435 0.66 0.319521
Target:  5'- aCUGCuuGAGGGCU--GUCAGauccaGGCCg -3'
miRNA:   3'- -GACGggCUCCUGGacCAGUCg----CUGGa -5'
12012 5' -60.5 NC_003278.1 + 6585 0.66 0.319521
Target:  5'- gUGCUCGcacacGACCUGGUCAugccCGACCg -3'
miRNA:   3'- gACGGGCuc---CUGGACCAGUc---GCUGGa -5'
12012 5' -60.5 NC_003278.1 + 8745 0.67 0.296671
Target:  5'- -gGCCCGAaGAcCCUGGccgcccUCGGCGGCgCUg -3'
miRNA:   3'- gaCGGGCUcCU-GGACC------AGUCGCUG-GA- -5'
12012 5' -60.5 NC_003278.1 + 14628 0.67 0.27511
Target:  5'- gCUGgCCGGcaacGGCCUGGUCGGCGGu-- -3'
miRNA:   3'- -GACgGGCUc---CUGGACCAGUCGCUgga -5'
12012 5' -60.5 NC_003278.1 + 21515 0.67 0.261445
Target:  5'- -gGCgCCGAGGcCCUGGgccaGGcCGGCCa -3'
miRNA:   3'- gaCG-GGCUCCuGGACCag--UC-GCUGGa -5'
12012 5' -60.5 NC_003278.1 + 7704 0.68 0.235778
Target:  5'- -cGUCCGAGacgagcgcGCCUGGggAGCGACCg -3'
miRNA:   3'- gaCGGGCUCc-------UGGACCagUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 21300 0.69 0.217942
Target:  5'- -cGUCC-AGGGCCUGGUgAaCGGCCUg -3'
miRNA:   3'- gaCGGGcUCCUGGACCAgUcGCUGGA- -5'
12012 5' -60.5 NC_003278.1 + 21517 0.69 0.212258
Target:  5'- -gGCCa-AGG-CCUGGUCAGCGcggGCCg -3'
miRNA:   3'- gaCGGgcUCCuGGACCAGUCGC---UGGa -5'
12012 5' -60.5 NC_003278.1 + 7058 0.69 0.212258
Target:  5'- aCUGCUCaggaaggaGAGGACCUGG-CAGauCGGCCc -3'
miRNA:   3'- -GACGGG--------CUCCUGGACCaGUC--GCUGGa -5'
12012 5' -60.5 NC_003278.1 + 13921 0.69 0.206702
Target:  5'- uUGCCaccacuCGAGGAUgUcGGUCAGCGAgCCg -3'
miRNA:   3'- gACGG------GCUCCUGgA-CCAGUCGCU-GGa -5'
12012 5' -60.5 NC_003278.1 + 21087 0.69 0.190784
Target:  5'- uUGCC--AGGACCaccgGGUUGGCGGCCa -3'
miRNA:   3'- gACGGgcUCCUGGa---CCAGUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 27424 0.69 0.190784
Target:  5'- -aGCCgGAGGAaagauaCUGGUUGGCGuugGCCUg -3'
miRNA:   3'- gaCGGgCUCCUg-----GACCAGUCGC---UGGA- -5'
12012 5' -60.5 NC_003278.1 + 2772 0.71 0.146892
Target:  5'- -cGCCCGAggugaagacgcaguuGGucaugaagGCCUGGUCAGUGAUCa -3'
miRNA:   3'- gaCGGGCU---------------CC--------UGGACCAGUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 30556 0.71 0.141317
Target:  5'- uUGCCgCGucGGCCaccuucuggcggUGGUCGGCGGCCa -3'
miRNA:   3'- gACGG-GCucCUGG------------ACCAGUCGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 32657 0.74 0.095383
Target:  5'- -cGCCCGAGGugUcGGUCcAGCGGCg- -3'
miRNA:   3'- gaCGGGCUCCugGaCCAG-UCGCUGga -5'
12012 5' -60.5 NC_003278.1 + 7852 0.74 0.092708
Target:  5'- -cGCCuCGAGGACCgccucGGUCAcgccggcgguGCGACCg -3'
miRNA:   3'- gaCGG-GCUCCUGGa----CCAGU----------CGCUGGa -5'
12012 5' -60.5 NC_003278.1 + 23399 1.07 0.000218
Target:  5'- gCUGCCCGAGGACCUGGUCAGCGACCUg -3'
miRNA:   3'- -GACGGGCUCCUGGACCAGUCGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.