Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12013 | 5' | -61.8 | NC_003278.1 | + | 1561 | 0.66 | 0.281991 |
Target: 5'- gUCuGGGCAAGCuuggaacuCGCGCCaaugcagacgcGCCUGCaGCa -3' miRNA: 3'- -GGuCUCGUUCG--------GCGCGG-----------CGGACG-CGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 2022 | 0.66 | 0.260029 |
Target: 5'- uCCAGAucggugccgcggcGCAuguacuuGGCCaGCGgCGCCUGCaGCg -3' miRNA: 3'- -GGUCU-------------CGU-------UCGG-CGCgGCGGACG-CGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 3361 | 0.74 | 0.064129 |
Target: 5'- -aAGGGCAAGCCG-GCCGCCgauCGCa -3' miRNA: 3'- ggUCUCGUUCGGCgCGGCGGac-GCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 5484 | 0.68 | 0.185882 |
Target: 5'- aCGGuguacGCAAGCCGCGCgacgUGUCcGCGCUc -3' miRNA: 3'- gGUCu----CGUUCGGCGCG----GCGGaCGCGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 5549 | 0.67 | 0.235784 |
Target: 5'- gCGGA-CAcGUCGCGCgGCUUGCGUa -3' miRNA: 3'- gGUCUcGUuCGGCGCGgCGGACGCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 6092 | 0.69 | 0.171438 |
Target: 5'- gUAGGGCAcuuccaccGGCgGCagGCCGCCcaUGCGCUu -3' miRNA: 3'- gGUCUCGU--------UCGgCG--CGGCGG--ACGCGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 7969 | 0.67 | 0.241349 |
Target: 5'- aCCAccGCcacGGCCGCGCCaucaugggccucgGCCUGgGCg -3' miRNA: 3'- -GGUcuCGu--UCGGCGCGG-------------CGGACgCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 8827 | 0.72 | 0.107135 |
Target: 5'- gCAGGuGCGAGCagucaGCGCCGCCgaggGCGg- -3' miRNA: 3'- gGUCU-CGUUCGg----CGCGGCGGa---CGCga -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 9475 | 0.67 | 0.235784 |
Target: 5'- -aGGAGCAAGCCGagaGCaccgaGCagggcgGCGCUg -3' miRNA: 3'- ggUCUCGUUCGGCg--CGg----CGga----CGCGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 9520 | 0.72 | 0.095694 |
Target: 5'- gCCAG-GCGGGCCuGCGCCagGUCgaUGCGCUg -3' miRNA: 3'- -GGUCuCGUUCGG-CGCGG--CGG--ACGCGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 10498 | 0.66 | 0.289149 |
Target: 5'- cCCucGAGcCAGGCCcucGUGCUGCCcucGCGCg -3' miRNA: 3'- -GGu-CUC-GUUCGG---CGCGGCGGa--CGCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 10506 | 0.66 | 0.289149 |
Target: 5'- uCCAGAGCcucgAGGCUGUcaGCCauugGCCggGCGCc -3' miRNA: 3'- -GGUCUCG----UUCGGCG--CGG----CGGa-CGCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 12860 | 0.69 | 0.166851 |
Target: 5'- uCCAGGGCGaggcgGGCgGCGauuuCCGCCUGCu-- -3' miRNA: 3'- -GGUCUCGU-----UCGgCGC----GGCGGACGcga -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 13200 | 0.67 | 0.218007 |
Target: 5'- cCCAGGGCAacGGCaGCGCC-CCgGCGg- -3' miRNA: 3'- -GGUCUCGU--UCGgCGCGGcGGaCGCga -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 13259 | 0.66 | 0.26136 |
Target: 5'- gCCGGGGCGcuGCCGUugcccuggGCgGCCUGCa-- -3' miRNA: 3'- -GGUCUCGUu-CGGCG--------CGgCGGACGcga -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 13357 | 0.68 | 0.185882 |
Target: 5'- cCCGGAGUccGAGCCGauacucgaUGCCGCCcGgGCc -3' miRNA: 3'- -GGUCUCG--UUCGGC--------GCGGCGGaCgCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 14273 | 0.66 | 0.274974 |
Target: 5'- cUCAGAcCAAGCUGauUCGCCaGCGCUa -3' miRNA: 3'- -GGUCUcGUUCGGCgcGGCGGaCGCGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 14295 | 0.67 | 0.241974 |
Target: 5'- -uGGGGUcAGCCgucucgccgggcGCGCCGCCgGCGUc -3' miRNA: 3'- ggUCUCGuUCGG------------CGCGGCGGaCGCGa -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 14913 | 0.66 | 0.26136 |
Target: 5'- gCCGGuAGUAgcccGGCCGCGUucaGCCUGagcaGCUu -3' miRNA: 3'- -GGUC-UCGU----UCGGCGCGg--CGGACg---CGA- -5' |
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12013 | 5' | -61.8 | NC_003278.1 | + | 16730 | 0.69 | 0.158006 |
Target: 5'- aCCAGGcgcuGCAGGCguacCGCCGCCaacUGCGCg -3' miRNA: 3'- -GGUCU----CGUUCGgc--GCGGCGG---ACGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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