miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12014 3' -52.2 NC_003278.1 + 18195 0.66 0.771618
Target:  5'- aUCAGGUgGGuCGGCucCCCGUCCgGGGa -3'
miRNA:   3'- -GGUCUAgCCuGUUGu-GGGUAGGgUUU- -5'
12014 3' -52.2 NC_003278.1 + 2954 0.66 0.760859
Target:  5'- aCCAGAcccgCGGugu-CGCCCGUCUCGGc -3'
miRNA:   3'- -GGUCUa---GCCuguuGUGGGUAGGGUUu -5'
12014 3' -52.2 NC_003278.1 + 34088 0.66 0.760859
Target:  5'- uCCGGAUgCGGAUGACccagACCCAUUCa--- -3'
miRNA:   3'- -GGUCUA-GCCUGUUG----UGGGUAGGguuu -5'
12014 3' -52.2 NC_003278.1 + 13781 0.66 0.72775
Target:  5'- cCCAGcgaucgaCGGAgAACGCCCAggCCAGGu -3'
miRNA:   3'- -GGUCua-----GCCUgUUGUGGGUagGGUUU- -5'
12014 3' -52.2 NC_003278.1 + 21475 0.67 0.713082
Target:  5'- cCCAGGUCGGcgAACACCCGcgacggcgaauggaUgCCGAGc -3'
miRNA:   3'- -GGUCUAGCCugUUGUGGGU--------------AgGGUUU- -5'
12014 3' -52.2 NC_003278.1 + 13503 0.67 0.68217
Target:  5'- aCuGGUCGGACAucgccgccACACCag-CCCAGg -3'
miRNA:   3'- gGuCUAGCCUGU--------UGUGGguaGGGUUu -5'
12014 3' -52.2 NC_003278.1 + 31134 0.67 0.68217
Target:  5'- cCCAG--CGGACaAACACCCGccuggcgCCCAGc -3'
miRNA:   3'- -GGUCuaGCCUG-UUGUGGGUa------GGGUUu -5'
12014 3' -52.2 NC_003278.1 + 18134 0.67 0.68217
Target:  5'- cCCGGA-CGGGgAGCcgACCCAccugauUCCCGGAg -3'
miRNA:   3'- -GGUCUaGCCUgUUG--UGGGU------AGGGUUU- -5'
12014 3' -52.2 NC_003278.1 + 12195 0.68 0.63573
Target:  5'- uCCAGA-CGGGCAACcagaCCGUCaCCGGc -3'
miRNA:   3'- -GGUCUaGCCUGUUGug--GGUAG-GGUUu -5'
12014 3' -52.2 NC_003278.1 + 4093 0.69 0.577672
Target:  5'- aCGGAUCGGG-GGCGCCCuggaagCCCGGu -3'
miRNA:   3'- gGUCUAGCCUgUUGUGGGua----GGGUUu -5'
12014 3' -52.2 NC_003278.1 + 9066 0.69 0.577672
Target:  5'- gCCAGAUC-GACGAUACCgCcgCCCu-- -3'
miRNA:   3'- -GGUCUAGcCUGUUGUGG-GuaGGGuuu -5'
12014 3' -52.2 NC_003278.1 + 18575 0.7 0.520851
Target:  5'- gCCGGGcUGGGCGuCACCCAUUUCGAu -3'
miRNA:   3'- -GGUCUaGCCUGUuGUGGGUAGGGUUu -5'
12014 3' -52.2 NC_003278.1 + 27550 0.72 0.405077
Target:  5'- gCCAGAUCGGcucugguccaGCGAagACCuCGUCCCAGg -3'
miRNA:   3'- -GGUCUAGCC----------UGUUg-UGG-GUAGGGUUu -5'
12014 3' -52.2 NC_003278.1 + 7648 0.72 0.395368
Target:  5'- cCCAGGcgcgcucgucUCGGACGACGgCCCGuucguuuaUCCCGAu -3'
miRNA:   3'- -GGUCU----------AGCCUGUUGU-GGGU--------AGGGUUu -5'
12014 3' -52.2 NC_003278.1 + 25287 1.09 0.001114
Target:  5'- aCCAGAUCGGACAACACCCAUCCCAAAg -3'
miRNA:   3'- -GGUCUAGCCUGUUGUGGGUAGGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.