miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12016 5' -49 NC_003278.1 + 9937 0.66 0.918318
Target:  5'- uGAAAgcgCAUc--UGCUCGCCGCCGu- -3'
miRNA:   3'- gCUUUa--GUAacaGCGAGUGGCGGUug -5'
12016 5' -49 NC_003278.1 + 6595 0.66 0.916987
Target:  5'- aCGAccuGGUCAUgcccgaccgcuUCGCgcgUACCGCCGGCu -3'
miRNA:   3'- -GCU---UUAGUAac---------AGCGa--GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 33096 0.66 0.911537
Target:  5'- -cAGGUCAgccgGUCGUUCGCCuUCGGCa -3'
miRNA:   3'- gcUUUAGUaa--CAGCGAGUGGcGGUUG- -5'
12016 5' -49 NC_003278.1 + 4129 0.67 0.881256
Target:  5'- gGugGUCGgcgaUGUCGCagACaCGCCAGCc -3'
miRNA:   3'- gCuuUAGUa---ACAGCGagUG-GCGGUUG- -5'
12016 5' -49 NC_003278.1 + 31852 0.67 0.872921
Target:  5'- gGAAAUC-----CGCcgCGCCGCCGGCg -3'
miRNA:   3'- gCUUUAGuaacaGCGa-GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 2506 0.67 0.872921
Target:  5'- uCGGAugagCAaacGUCGCagccacCGCCGCCAGCa -3'
miRNA:   3'- -GCUUua--GUaa-CAGCGa-----GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 15891 0.67 0.855386
Target:  5'- aUGAucuAUCAgaccuaucGUgGCUaCGCCGCCGGCg -3'
miRNA:   3'- -GCUu--UAGUaa------CAgCGA-GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 6112 0.67 0.846204
Target:  5'- -cAGAUCGgcgGUCGC-CGCCGCUAc- -3'
miRNA:   3'- gcUUUAGUaa-CAGCGaGUGGCGGUug -5'
12016 5' -49 NC_003278.1 + 20102 0.67 0.846204
Target:  5'- cCGAGGUCcaUGUCGCccgCGgCUGCCAGg -3'
miRNA:   3'- -GCUUUAGuaACAGCGa--GU-GGCGGUUg -5'
12016 5' -49 NC_003278.1 + 16625 0.68 0.817126
Target:  5'- uCGAGcgCgAUUGgCGCg-ACCGCCAGCu -3'
miRNA:   3'- -GCUUuaG-UAACaGCGagUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 15291 0.68 0.817126
Target:  5'- uCGAA--CGUUGUCGa--GCCGCUGACg -3'
miRNA:   3'- -GCUUuaGUAACAGCgagUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 17594 0.68 0.797632
Target:  5'- gGAGGUCGguuggcacaagacccUGUCGaacgUCGCCGUCAACg -3'
miRNA:   3'- gCUUUAGUa--------------ACAGCg---AGUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 21426 0.69 0.77524
Target:  5'- uGAAccaGUCGa--UCGCggCGCCGCCGACg -3'
miRNA:   3'- gCUU---UAGUaacAGCGa-GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 33219 0.7 0.707516
Target:  5'- --cAGUCGcUGUCGCUCagGCCGUCGAg -3'
miRNA:   3'- gcuUUAGUaACAGCGAG--UGGCGGUUg -5'
12016 5' -49 NC_003278.1 + 30468 0.71 0.672292
Target:  5'- aCGAGuUCGUgaa-GCUgGCCGCCGACc -3'
miRNA:   3'- -GCUUuAGUAacagCGAgUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 32446 0.71 0.660444
Target:  5'- gCGAGGUCGUUcaGgcugCGCcagUCGCUGCCGGCu -3'
miRNA:   3'- -GCUUUAGUAA--Ca---GCG---AGUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 14295 0.71 0.648564
Target:  5'- uGggGUCAgccgucUCGCcgggcgCGCCGCCGGCg -3'
miRNA:   3'- gCuuUAGUaac---AGCGa-----GUGGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 13986 0.73 0.565605
Target:  5'- uCGAGAcCGUUGUCGCUgA-CGUCGACg -3'
miRNA:   3'- -GCUUUaGUAACAGCGAgUgGCGGUUG- -5'
12016 5' -49 NC_003278.1 + 18482 0.77 0.3447
Target:  5'- uCGAAAUC---GUCGUUCGCgGCCGGCa -3'
miRNA:   3'- -GCUUUAGuaaCAGCGAGUGgCGGUUG- -5'
12016 5' -49 NC_003278.1 + 26922 1.04 0.006081
Target:  5'- cCGAAAUCAUUGUCGCUCACCGCCAc- -3'
miRNA:   3'- -GCUUUAGUAACAGCGAGUGGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.