miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12017 3' -55.8 NC_003278.1 + 21449 0.66 0.528757
Target:  5'- -cCAUGGCCGGc---CUgGCCCAGgGc -3'
miRNA:   3'- aaGUACCGGCUuguuGAgCGGGUCgC- -5'
12017 3' -55.8 NC_003278.1 + 15148 0.66 0.516645
Target:  5'- aUCAagGGCCGGAauaucACUCgcuacaaGCCCAGUGg -3'
miRNA:   3'- aAGUa-CCGGCUUgu---UGAG-------CGGGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 9488 0.66 0.514455
Target:  5'- ----aGGCCGAGuuggcgaggaaagcCAGCgaCGCCCAGCu -3'
miRNA:   3'- aaguaCCGGCUU--------------GUUGa-GCGGGUCGc -5'
12017 3' -55.8 NC_003278.1 + 10189 0.66 0.50682
Target:  5'- cUUCGaGGCCG-ACAuGCUCGaCCgCAGCa -3'
miRNA:   3'- -AAGUaCCGGCuUGU-UGAGC-GG-GUCGc -5'
12017 3' -55.8 NC_003278.1 + 7370 0.67 0.48528
Target:  5'- --aGUGGCCGAGCGcuaccGCUgGUacgacaccaccaCCAGCGg -3'
miRNA:   3'- aagUACCGGCUUGU-----UGAgCG------------GGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 12729 0.67 0.474674
Target:  5'- ---cUGGacuaCGAGCAgauACUCGCCgAGCGc -3'
miRNA:   3'- aaguACCg---GCUUGU---UGAGCGGgUCGC- -5'
12017 3' -55.8 NC_003278.1 + 22840 0.67 0.442565
Target:  5'- gUUGUuGCCGAggGCGAUgucggugagcacgUCGCCCAGCGu -3'
miRNA:   3'- aAGUAcCGGCU--UGUUG-------------AGCGGGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 32686 0.67 0.436492
Target:  5'- ---uUGGCCGGGCGACUugacgccgaugauggCGCCCgaggugucgguccAGCGg -3'
miRNA:   3'- aaguACCGGCUUGUUGA---------------GCGGG-------------UCGC- -5'
12017 3' -55.8 NC_003278.1 + 28594 0.68 0.423501
Target:  5'- cUCAUGGCCGAcACGGCgucgaUGCCguggugcagCAGCGc -3'
miRNA:   3'- aAGUACCGGCU-UGUUGa----GCGG---------GUCGC- -5'
12017 3' -55.8 NC_003278.1 + 3 0.68 0.423501
Target:  5'- -gCGUGGCggggGGACGACUgcgCGCgCCGGCGa -3'
miRNA:   3'- aaGUACCGg---CUUGUUGA---GCG-GGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 25410 0.68 0.413667
Target:  5'- cUCGaGGCCu-GCAACgCGUCCAGCa -3'
miRNA:   3'- aAGUaCCGGcuUGUUGaGCGGGUCGc -5'
12017 3' -55.8 NC_003278.1 + 10414 0.68 0.403975
Target:  5'- ----cGGCC-AGCAGCUCGCCguuGGCGa -3'
miRNA:   3'- aaguaCCGGcUUGUUGAGCGGg--UCGC- -5'
12017 3' -55.8 NC_003278.1 + 14218 0.68 0.394428
Target:  5'- aUCGgugacGCCG-GCGGCgCGCCCGGCGa -3'
miRNA:   3'- aAGUac---CGGCuUGUUGaGCGGGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 1868 0.68 0.385028
Target:  5'- -gCGUGGCCGA----CUCGUUCAGCa -3'
miRNA:   3'- aaGUACCGGCUuguuGAGCGGGUCGc -5'
12017 3' -55.8 NC_003278.1 + 32317 0.69 0.357732
Target:  5'- ----cGGCCGAGgAugUCGCCgaCGGCGc -3'
miRNA:   3'- aaguaCCGGCUUgUugAGCGG--GUCGC- -5'
12017 3' -55.8 NC_003278.1 + 29802 0.7 0.291765
Target:  5'- cUCGaGGCCGAccgcagcgacaACAGC-CGCgCCGGCGg -3'
miRNA:   3'- aAGUaCCGGCU-----------UGUUGaGCG-GGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 7260 0.7 0.291765
Target:  5'- aUCGcGGCCGGcuauGCcgAACUCGCCCAGg- -3'
miRNA:   3'- aAGUaCCGGCU----UG--UUGAGCGGGUCgc -5'
12017 3' -55.8 NC_003278.1 + 10334 0.7 0.284222
Target:  5'- gUCGaugGGCCGAuGCAgauGCUCGCCaaCGGCGa -3'
miRNA:   3'- aAGUa--CCGGCU-UGU---UGAGCGG--GUCGC- -5'
12017 3' -55.8 NC_003278.1 + 31390 0.71 0.262519
Target:  5'- -aCGUcGGCgGcuCGcACUCGCCCAGCGa -3'
miRNA:   3'- aaGUA-CCGgCuuGU-UGAGCGGGUCGC- -5'
12017 3' -55.8 NC_003278.1 + 14430 0.72 0.223177
Target:  5'- gUUCGUGGCgGucgcCAACUgccCGCCCAGCu -3'
miRNA:   3'- -AAGUACCGgCuu--GUUGA---GCGGGUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.