Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12019 | 5' | -54.8 | NC_003278.1 | + | 13724 | 0.69 | 0.443627 |
Target: 5'- gGGCGUUcuccGUCGAUcGCUGGgACAGCa -3' miRNA: 3'- -CCGCGAc---UAGCUAcCGACCaUGUCGg -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 17444 | 0.69 | 0.443627 |
Target: 5'- aGGCGCgcaguugcUGggCGAUGGCgaUGaGUGCGGUa -3' miRNA: 3'- -CCGCG--------ACuaGCUACCG--AC-CAUGUCGg -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 4838 | 0.69 | 0.437594 |
Target: 5'- uGGCGCUGAaggagagcgccUCGGUacccaGGCUGGcgggggagucggugAUGGCCa -3' miRNA: 3'- -CCGCGACU-----------AGCUA-----CCGACCa-------------UGUCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 14163 | 0.69 | 0.433598 |
Target: 5'- aGCGCUGAUCGcggcgagcgaGGCcGGgaagaagugGCAGCCc -3' miRNA: 3'- cCGCGACUAGCua--------CCGaCCa--------UGUCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 15343 | 0.69 | 0.413941 |
Target: 5'- aGGgGCUGGUuacCGGUGGC-GGU--GGCCu -3' miRNA: 3'- -CCgCGACUA---GCUACCGaCCAugUCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 25638 | 0.7 | 0.404321 |
Target: 5'- gGGCaUUGAUUGAaugGGCUuucGGUcGCAGCCg -3' miRNA: 3'- -CCGcGACUAGCUa--CCGA---CCA-UGUCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 23294 | 0.7 | 0.358399 |
Target: 5'- aGGCGUgaagacggaGAUCGAUGcgaucauCUGGUACGGCg -3' miRNA: 3'- -CCGCGa--------CUAGCUACc------GACCAUGUCGg -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 9089 | 0.71 | 0.349664 |
Target: 5'- aGGCGCUGGUgcucGGC-GGUGCcGCCg -3' miRNA: 3'- -CCGCGACUAgcuaCCGaCCAUGuCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 30243 | 0.71 | 0.349664 |
Target: 5'- uGGCcCUGGUCGAcgcgcUGcGcCUGGUGguGCCg -3' miRNA: 3'- -CCGcGACUAGCU-----AC-C-GACCAUguCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 9771 | 0.71 | 0.325197 |
Target: 5'- gGGCGCUGuugcagccggCGAgcaacaucaggcagaGGCUGGU-CAGCCc -3' miRNA: 3'- -CCGCGACua--------GCUa--------------CCGACCAuGUCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 23067 | 0.71 | 0.321924 |
Target: 5'- cGGUGCUGGUCGccauccUGGCgGGUgagguugaugugcgGCAGCg -3' miRNA: 3'- -CCGCGACUAGCu-----ACCGaCCA--------------UGUCGg -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 2345 | 0.72 | 0.300476 |
Target: 5'- aGUGCUGGcCGAacgGGCggUGGUACgAGCCg -3' miRNA: 3'- cCGCGACUaGCUa--CCG--ACCAUG-UCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 5742 | 0.72 | 0.270757 |
Target: 5'- cGGCGC-GGUUGGUGGUagccgcggcgcUGGUGCcguugaAGCCg -3' miRNA: 3'- -CCGCGaCUAGCUACCG-----------ACCAUG------UCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 3731 | 0.75 | 0.201204 |
Target: 5'- aGGCGCUGAUCGAcGcGCUGGaaacGgGGCg -3' miRNA: 3'- -CCGCGACUAGCUaC-CGACCa---UgUCGg -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 14346 | 0.82 | 0.063075 |
Target: 5'- cGUGCUGGUCGccGaGCUGGUACuGCCg -3' miRNA: 3'- cCGCGACUAGCuaC-CGACCAUGuCGG- -5' |
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12019 | 5' | -54.8 | NC_003278.1 | + | 28262 | 1.15 | 0.000248 |
Target: 5'- uGGCGCUGAUCGAUGGCUGGUACAGCCa -3' miRNA: 3'- -CCGCGACUAGCUACCGACCAUGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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