miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12020 3' -47.8 NC_003278.1 + 6685 0.68 0.90873
Target:  5'- cCGGCgGCAGuUUCGACcuu-GCGACCu -3'
miRNA:   3'- -GUUGgCGUUuAAGCUGaccuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 9720 0.68 0.90873
Target:  5'- cCGGCUGCAAcagCGccccgcuaucACcGGAGCGGCCg -3'
miRNA:   3'- -GUUGGCGUUuaaGC----------UGaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32718 0.68 0.90873
Target:  5'- uGGCCGCGGGgaUCGGCgacGGAguACGugCc -3'
miRNA:   3'- gUUGGCGUUUa-AGCUGa--CCU--UGCugG- -5'
12020 3' -47.8 NC_003278.1 + 18290 0.68 0.894005
Target:  5'- --uCCGCGGGggCGGCauGAACGGCCc -3'
miRNA:   3'- guuGGCGUUUaaGCUGacCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 18863 0.68 0.886178
Target:  5'- -cGCCGCGcuugaUCGGCUGGucgaggggGACGACg -3'
miRNA:   3'- guUGGCGUuua--AGCUGACC--------UUGCUGg -5'
12020 3' -47.8 NC_003278.1 + 33163 0.68 0.886178
Target:  5'- aCGGCCugaGCGAcagCGACUGGcGCGAgCg -3'
miRNA:   3'- -GUUGG---CGUUuaaGCUGACCuUGCUgG- -5'
12020 3' -47.8 NC_003278.1 + 31561 0.69 0.869626
Target:  5'- aCAGCCuuggccuguugGCGAAUUCGGCUGcAGCGuugguguuuGCCg -3'
miRNA:   3'- -GUUGG-----------CGUUUAAGCUGACcUUGC---------UGG- -5'
12020 3' -47.8 NC_003278.1 + 3047 0.69 0.869626
Target:  5'- uGAUCGcCAGGUgUGGCUGGGcuAUGACCc -3'
miRNA:   3'- gUUGGC-GUUUAaGCUGACCU--UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 18902 0.69 0.860916
Target:  5'- -uGCUGC-AGUUCGAUgUGGccGCGACCa -3'
miRNA:   3'- guUGGCGuUUAAGCUG-ACCu-UGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 16621 0.69 0.860916
Target:  5'- aCGAUCGagcg--CGAUUGGcGCGACCg -3'
miRNA:   3'- -GUUGGCguuuaaGCUGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32375 0.7 0.823403
Target:  5'- gAGCCgGCAg---CGACUGGcgcagccugAACGACCu -3'
miRNA:   3'- gUUGG-CGUuuaaGCUGACC---------UUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 30873 0.7 0.823403
Target:  5'- uGGCCGCug--UCGcGCUGG-GCGAUCg -3'
miRNA:   3'- gUUGGCGuuuaAGC-UGACCuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 7152 0.7 0.803198
Target:  5'- gGAUCGCuguuGAUgugccCGGCUGGGACcgGGCCg -3'
miRNA:   3'- gUUGGCGu---UUAa----GCUGACCUUG--CUGG- -5'
12020 3' -47.8 NC_003278.1 + 34172 0.7 0.803198
Target:  5'- gAACCugGCgGAAUUCauGAuCUGGAGCGGCCc -3'
miRNA:   3'- gUUGG--CG-UUUAAG--CU-GACCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 21372 0.7 0.803198
Target:  5'- -cGCCGCGA--UCGACUGGuucAAgGACa -3'
miRNA:   3'- guUGGCGUUuaAGCUGACC---UUgCUGg -5'
12020 3' -47.8 NC_003278.1 + 6515 0.7 0.803198
Target:  5'- -cGCCGgAAAUguaCGGCUGGua-GACCg -3'
miRNA:   3'- guUGGCgUUUAa--GCUGACCuugCUGG- -5'
12020 3' -47.8 NC_003278.1 + 32589 0.7 0.802165
Target:  5'- gGGCCGCGAcagagaaugcgccGUUCGugggGCUGcuGCGACCg -3'
miRNA:   3'- gUUGGCGUU-------------UAAGC----UGACcuUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 8283 0.7 0.792776
Target:  5'- gCGACCGCcuuga-GGCUgaggGGAAUGACCa -3'
miRNA:   3'- -GUUGGCGuuuaagCUGA----CCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 4406 0.71 0.760399
Target:  5'- --uCCGCAucgccgUCGAa-GGGGCGACCa -3'
miRNA:   3'- guuGGCGUuua---AGCUgaCCUUGCUGG- -5'
12020 3' -47.8 NC_003278.1 + 20042 0.72 0.69191
Target:  5'- gCAGCCGCGGg--CGACaUGGAccucgGCGACa -3'
miRNA:   3'- -GUUGGCGUUuaaGCUG-ACCU-----UGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.