miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12021 5' -59.6 NC_003278.1 + 7038 0.66 0.356785
Target:  5'- cGG-CGACCucaAGCGAgCAGCAGCaugaGCGg -3'
miRNA:   3'- -CCgGCUGGcg-UCGCU-GUUGUCGg---CGC- -5'
12021 5' -59.6 NC_003278.1 + 13734 0.66 0.356785
Target:  5'- cGUCGAUCGCuGgGACAGCaccuGGCCGg- -3'
miRNA:   3'- cCGGCUGGCGuCgCUGUUG----UCGGCgc -5'
12021 5' -59.6 NC_003278.1 + 25506 0.66 0.355939
Target:  5'- aGuCCGACCGCAGCGGCcgUucccuugAGCCa-- -3'
miRNA:   3'- cC-GGCUGGCGUCGCUGuuG-------UCGGcgc -5'
12021 5' -59.6 NC_003278.1 + 21420 0.67 0.348386
Target:  5'- aGUCGAUCGCGGCGcCGccgacgcgcuggACGGCgCGCu -3'
miRNA:   3'- cCGGCUGGCGUCGCuGU------------UGUCG-GCGc -5'
12021 5' -59.6 NC_003278.1 + 8758 0.67 0.348386
Target:  5'- uGGCCGcCCuCGGCGGCGcugACuGCuCGCa -3'
miRNA:   3'- -CCGGCuGGcGUCGCUGU---UGuCG-GCGc -5'
12021 5' -59.6 NC_003278.1 + 5749 0.67 0.34013
Target:  5'- gGGuuGGCgGC-GCGGuuggUggUAGCCGCGg -3'
miRNA:   3'- -CCggCUGgCGuCGCU----GuuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 2579 0.67 0.332016
Target:  5'- cGGCCGGCgGUauaggugaacuGGCGccCAcCGGCCGUGa -3'
miRNA:   3'- -CCGGCUGgCG-----------UCGCu-GUuGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 5462 0.67 0.332016
Target:  5'- aGCCGuACCGauaccacuGGCGACGguguacGCaAGCCGCGc -3'
miRNA:   3'- cCGGC-UGGCg-------UCGCUGU------UG-UCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 16002 0.67 0.332016
Target:  5'- aGCUGACCauguuccguuGUAGCGGCAGCGccaguacagaccGCCgGCGg -3'
miRNA:   3'- cCGGCUGG----------CGUCGCUGUUGU------------CGG-CGC- -5'
12021 5' -59.6 NC_003278.1 + 14223 0.67 0.324045
Target:  5'- cGGCCucGCuCGCcGCGAuCAGCGcuGCCGCGc -3'
miRNA:   3'- -CCGGc-UG-GCGuCGCU-GUUGU--CGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 26905 0.67 0.319332
Target:  5'- cGGUCGACCucaccgcgccugaugGCGGUGGCGAC-GCCccugGCGu -3'
miRNA:   3'- -CCGGCUGG---------------CGUCGCUGUUGuCGG----CGC- -5'
12021 5' -59.6 NC_003278.1 + 11864 0.67 0.316218
Target:  5'- uGGUCcACCGCGGCGAUggU-GCCgagGCGg -3'
miRNA:   3'- -CCGGcUGGCGUCGCUGuuGuCGG---CGC- -5'
12021 5' -59.6 NC_003278.1 + 22954 0.67 0.316218
Target:  5'- cGGCCgguggcggcaaGACUGcCAGCGGCcuggcGCuGCCGCa -3'
miRNA:   3'- -CCGG-----------CUGGC-GUCGCUGu----UGuCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 19882 0.67 0.316218
Target:  5'- aGGaCGAuCCGCAgaugcaggcgcuGCGGCAACAGgcCCGCa -3'
miRNA:   3'- -CCgGCU-GGCGU------------CGCUGUUGUC--GGCGc -5'
12021 5' -59.6 NC_003278.1 + 18991 0.67 0.316218
Target:  5'- cGGCUGGCUGaugcGCGGCAggauuuugAUGGUCGCGg -3'
miRNA:   3'- -CCGGCUGGCgu--CGCUGU--------UGUCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 21351 0.67 0.308534
Target:  5'- cGCCGuCCaGCGcGuCGGCGGC-GCCGCGa -3'
miRNA:   3'- cCGGCuGG-CGU-C-GCUGUUGuCGGCGC- -5'
12021 5' -59.6 NC_003278.1 + 13186 0.67 0.308534
Target:  5'- aGGCaucgccgacgCGACCGuCGGCGGCG-CGGgCGUGg -3'
miRNA:   3'- -CCG----------GCUGGC-GUCGCUGUuGUCgGCGC- -5'
12021 5' -59.6 NC_003278.1 + 22263 0.67 0.308534
Target:  5'- aGCuCaAgCGCAuCGACGACGGCCGCa -3'
miRNA:   3'- cCG-GcUgGCGUcGCUGUUGUCGGCGc -5'
12021 5' -59.6 NC_003278.1 + 29392 0.67 0.306257
Target:  5'- uGGCgGugCGCGGCGGCGugAucgagaaggccaacGCCGa- -3'
miRNA:   3'- -CCGgCugGCGUCGCUGUugU--------------CGGCgc -5'
12021 5' -59.6 NC_003278.1 + 13017 0.68 0.300993
Target:  5'- uGCCGgaACUGCuggagucCGACGACAGCCuGCGc -3'
miRNA:   3'- cCGGC--UGGCGuc-----GCUGUUGUCGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.