miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 3' -57.5 NC_003278.1 + 5035 0.68 0.374032
Target:  5'- -uUCGACGGCCUC-GCCgACCUGGcCGa -3'
miRNA:   3'- ucGGCUGUUGGAGuUGG-UGGACCcGC- -5'
12022 3' -57.5 NC_003278.1 + 29261 0.68 0.374032
Target:  5'- cGCUGGCcGCC---GCgACCUGGGCa -3'
miRNA:   3'- uCGGCUGuUGGaguUGgUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 26605 0.68 0.373138
Target:  5'- uGGCgGACGcgaaugcGCCgcCGcCCGCCUGGGCc -3'
miRNA:   3'- -UCGgCUGU-------UGGa-GUuGGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 5639 0.68 0.365158
Target:  5'- cGCCaGGC--CCUCGACCGCCUGaugaucGGCu -3'
miRNA:   3'- uCGG-CUGuuGGAGUUGGUGGAC------CCGc -5'
12022 3' -57.5 NC_003278.1 + 13394 0.68 0.365158
Target:  5'- cGCuUGACGGCCuacguccaUCAGCgucgaCGCCUGGGCa -3'
miRNA:   3'- uCG-GCUGUUGG--------AGUUG-----GUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 15986 0.68 0.357297
Target:  5'- -uCCGGCAACUUCAACCcggccaacuaugugGCCaagucggaauacuccUGGGCGu -3'
miRNA:   3'- ucGGCUGUUGGAGUUGG--------------UGG---------------ACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 32394 0.68 0.356431
Target:  5'- cAGCCuGaACGACCUCGccgucgaggacgGCUACCUGcGCGa -3'
miRNA:   3'- -UCGG-C-UGUUGGAGU------------UGGUGGACcCGC- -5'
12022 3' -57.5 NC_003278.1 + 22931 0.68 0.347851
Target:  5'- aAGCCGGCuGCCUgcuCUGCCUGcGGCc -3'
miRNA:   3'- -UCGGCUGuUGGAguuGGUGGAC-CCGc -5'
12022 3' -57.5 NC_003278.1 + 22990 0.68 0.347851
Target:  5'- uGCCGcacauCAACCUCAcCCGCCaggauGGCGa -3'
miRNA:   3'- uCGGCu----GUUGGAGUuGGUGGac---CCGC- -5'
12022 3' -57.5 NC_003278.1 + 2619 0.68 0.347851
Target:  5'- cGGCCgcaacGACAACaC-CGGCCacgccgaucugGCCUGGGCGc -3'
miRNA:   3'- -UCGG-----CUGUUG-GaGUUGG-----------UGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 21452 0.68 0.342774
Target:  5'- uGGCCGGCcuggcccagGGCCUCGgcgccggccaggccgGCC-CgCUGGGCGu -3'
miRNA:   3'- -UCGGCUG---------UUGGAGU---------------UGGuG-GACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 10783 0.68 0.339419
Target:  5'- -uCCGACcagcgaaggaAACCgUGAUCGCCUGGGCGu -3'
miRNA:   3'- ucGGCUG----------UUGGaGUUGGUGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 7979 0.69 0.323005
Target:  5'- cGGCCG-C-GCCaUCAuggGCCucgGCCUGGGCGu -3'
miRNA:   3'- -UCGGCuGuUGG-AGU---UGG---UGGACCCGC- -5'
12022 3' -57.5 NC_003278.1 + 21529 0.69 0.323005
Target:  5'- gGGCCGGCcuGGCCggcGCCGaggcCCUGGGCc -3'
miRNA:   3'- -UCGGCUG--UUGGaguUGGU----GGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 19571 0.69 0.323005
Target:  5'- cGCCGGCAucagcacccgcaACCUCGGCCagcaugagcgcgACCUGcGCGc -3'
miRNA:   3'- uCGGCUGU------------UGGAGUUGG------------UGGACcCGC- -5'
12022 3' -57.5 NC_003278.1 + 34043 0.69 0.3222
Target:  5'- uGCUGACGAUCUCucgcACCgucuuguugugcaGCUUGGGCa -3'
miRNA:   3'- uCGGCUGUUGGAGu---UGG-------------UGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 2371 0.69 0.3222
Target:  5'- cGGCCGggGCAuCCUCGACUaucucgagugcugGCCgaacGGGCGg -3'
miRNA:   3'- -UCGGC--UGUuGGAGUUGG-------------UGGa---CCCGC- -5'
12022 3' -57.5 NC_003278.1 + 29329 0.69 0.315022
Target:  5'- cGgUGGCcACCaUCGAUUACCUGGGCu -3'
miRNA:   3'- uCgGCUGuUGG-AGUUGGUGGACCCGc -5'
12022 3' -57.5 NC_003278.1 + 8816 0.69 0.315022
Target:  5'- cGCCGGagcucGCCUCGACCuGCCgcuGGCGa -3'
miRNA:   3'- uCGGCUgu---UGGAGUUGG-UGGac-CCGC- -5'
12022 3' -57.5 NC_003278.1 + 21397 0.69 0.314232
Target:  5'- aAGCuCGGCAuccauucGCCgUCGcggguguucGCCgACCUGGGCGg -3'
miRNA:   3'- -UCG-GCUGU-------UGG-AGU---------UGG-UGGACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.