miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12022 5' -56.3 NC_003278.1 + 20794 0.66 0.436073
Target:  5'- cGUC-GCCGCguuUUCggcGCUGAUGGCUAc -3'
miRNA:   3'- -CAGuCGGUGa--AGGa--CGACUACCGGUa -5'
12022 5' -56.3 NC_003278.1 + 7414 0.66 0.425957
Target:  5'- cUCGGCCACUUCg-GCggcGGUGGCa-- -3'
miRNA:   3'- cAGUCGGUGAAGgaCGa--CUACCGgua -5'
12022 5' -56.3 NC_003278.1 + 30203 0.67 0.397429
Target:  5'- uUCAGCCGCUcgcggaagcacUCCagcacgcgggccucgGCgcgGAUGGCCAUc -3'
miRNA:   3'- cAGUCGGUGA-----------AGGa--------------CGa--CUACCGGUA- -5'
12022 5' -56.3 NC_003278.1 + 8127 0.67 0.377552
Target:  5'- uUCAGgucCUGCUUCgUGCcGGUGGCCAg -3'
miRNA:   3'- cAGUC---GGUGAAGgACGaCUACCGGUa -5'
12022 5' -56.3 NC_003278.1 + 30550 0.68 0.324551
Target:  5'- cGUCGGCCAcCUUCUgGC-GGUGGUCGg -3'
miRNA:   3'- -CAGUCGGU-GAAGGaCGaCUACCGGUa -5'
12022 5' -56.3 NC_003278.1 + 34585 0.69 0.300202
Target:  5'- ---cGCCGCaUUCCUGa-GGUGGCCAUg -3'
miRNA:   3'- caguCGGUG-AAGGACgaCUACCGGUA- -5'
12022 5' -56.3 NC_003278.1 + 8550 0.71 0.210949
Target:  5'- cGUC-GCCGC--CCUGCUGA-GGCCAUc -3'
miRNA:   3'- -CAGuCGGUGaaGGACGACUaCCGGUA- -5'
12022 5' -56.3 NC_003278.1 + 19034 0.72 0.193894
Target:  5'- gGUCGGCCGggUCCaUGCcGGUGGCCu- -3'
miRNA:   3'- -CAGUCGGUgaAGG-ACGaCUACCGGua -5'
12022 5' -56.3 NC_003278.1 + 19737 0.72 0.183206
Target:  5'- gGUCAGgCGC-UCCUGCUGcUGGCUg- -3'
miRNA:   3'- -CAGUCgGUGaAGGACGACuACCGGua -5'
12022 5' -56.3 NC_003278.1 + 32164 0.75 0.114682
Target:  5'- gGUCuGGCCcagucgcggaagcGCUUCCUGCUGGUGGCgCGg -3'
miRNA:   3'- -CAG-UCGG-------------UGAAGGACGACUACCG-GUa -5'
12022 5' -56.3 NC_003278.1 + 30097 1.05 0.000631
Target:  5'- gGUCAGCCACUUCCUGCUGAUGGCCAUc -3'
miRNA:   3'- -CAGUCGGUGAAGGACGACUACCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.