Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12022 | 5' | -56.3 | NC_003278.1 | + | 34585 | 0.69 | 0.300202 |
Target: 5'- ---cGCCGCaUUCCUGa-GGUGGCCAUg -3' miRNA: 3'- caguCGGUG-AAGGACgaCUACCGGUA- -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 32164 | 0.75 | 0.114682 |
Target: 5'- gGUCuGGCCcagucgcggaagcGCUUCCUGCUGGUGGCgCGg -3' miRNA: 3'- -CAG-UCGG-------------UGAAGGACGACUACCG-GUa -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 30550 | 0.68 | 0.324551 |
Target: 5'- cGUCGGCCAcCUUCUgGC-GGUGGUCGg -3' miRNA: 3'- -CAGUCGGU-GAAGGaCGaCUACCGGUa -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 30203 | 0.67 | 0.397429 |
Target: 5'- uUCAGCCGCUcgcggaagcacUCCagcacgcgggccucgGCgcgGAUGGCCAUc -3' miRNA: 3'- cAGUCGGUGA-----------AGGa--------------CGa--CUACCGGUA- -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 30097 | 1.05 | 0.000631 |
Target: 5'- gGUCAGCCACUUCCUGCUGAUGGCCAUc -3' miRNA: 3'- -CAGUCGGUGAAGGACGACUACCGGUA- -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 20794 | 0.66 | 0.436073 |
Target: 5'- cGUC-GCCGCguuUUCggcGCUGAUGGCUAc -3' miRNA: 3'- -CAGuCGGUGa--AGGa--CGACUACCGGUa -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 19737 | 0.72 | 0.183206 |
Target: 5'- gGUCAGgCGC-UCCUGCUGcUGGCUg- -3' miRNA: 3'- -CAGUCgGUGaAGGACGACuACCGGua -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 19034 | 0.72 | 0.193894 |
Target: 5'- gGUCGGCCGggUCCaUGCcGGUGGCCu- -3' miRNA: 3'- -CAGUCGGUgaAGG-ACGaCUACCGGua -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 8550 | 0.71 | 0.210949 |
Target: 5'- cGUC-GCCGC--CCUGCUGA-GGCCAUc -3' miRNA: 3'- -CAGuCGGUGaaGGACGACUaCCGGUA- -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 8127 | 0.67 | 0.377552 |
Target: 5'- uUCAGgucCUGCUUCgUGCcGGUGGCCAg -3' miRNA: 3'- cAGUC---GGUGAAGgACGaCUACCGGUa -5' |
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12022 | 5' | -56.3 | NC_003278.1 | + | 7414 | 0.66 | 0.425957 |
Target: 5'- cUCGGCCACUUCg-GCggcGGUGGCa-- -3' miRNA: 3'- cAGUCGGUGAAGgaCGa--CUACCGgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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