miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12024 3' -53.1 NC_003278.1 + 9091 0.66 0.718193
Target:  5'- ----cCAGGcGCUGgugcUCGGCGGUGCCGc -3'
miRNA:   3'- cuuauGUUC-CGGC----AGCUGUCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 32143 0.66 0.718193
Target:  5'- ---aGC-AGGCUGUUGAUcugguccagcaGGUGCCGg -3'
miRNA:   3'- cuuaUGuUCCGGCAGCUG-----------UCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 8599 0.66 0.718193
Target:  5'- ---aGCAGGGCgG-CGACGuUGCCGc -3'
miRNA:   3'- cuuaUGUUCCGgCaGCUGUcACGGCa -5'
12024 3' -53.1 NC_003278.1 + 5506 0.66 0.718193
Target:  5'- cGGUAC--GGCUGgCGAUGGUGCCGc -3'
miRNA:   3'- cUUAUGuuCCGGCaGCUGUCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 30922 0.66 0.672596
Target:  5'- ---gGCuuGGCCGUUGuACAG-GCCGa -3'
miRNA:   3'- cuuaUGuuCCGGCAGC-UGUCaCGGCa -5'
12024 3' -53.1 NC_003278.1 + 27286 0.67 0.661059
Target:  5'- ---cGCGAGGUCG-CGGC-GUGCCa- -3'
miRNA:   3'- cuuaUGUUCCGGCaGCUGuCACGGca -5'
12024 3' -53.1 NC_003278.1 + 32199 0.67 0.649492
Target:  5'- ---gGCGcGGCaCGUCGAgaaAGUGCCGc -3'
miRNA:   3'- cuuaUGUuCCG-GCAGCUg--UCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 31517 0.67 0.614732
Target:  5'- ----cCAAGGCUGUCGAguGgGCCa- -3'
miRNA:   3'- cuuauGUUCCGGCAGCUguCaCGGca -5'
12024 3' -53.1 NC_003278.1 + 14635 0.68 0.545937
Target:  5'- ---gGCAAcGGCCugGUCGGCGGUGgCGa -3'
miRNA:   3'- cuuaUGUU-CCGG--CAGCUGUCACgGCa -5'
12024 3' -53.1 NC_003278.1 + 32786 0.69 0.512425
Target:  5'- uAGUACu-GGCCG-CGAUcacGGUGCCGg -3'
miRNA:   3'- cUUAUGuuCCGGCaGCUG---UCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 20309 0.7 0.458609
Target:  5'- ---aGCAGGGCCGU-GGCGGUGgugaCCGUc -3'
miRNA:   3'- cuuaUGUUCCGGCAgCUGUCAC----GGCA- -5'
12024 3' -53.1 NC_003278.1 + 9590 0.7 0.448207
Target:  5'- -----gAGGGCCGU-GAUGGUGCCGg -3'
miRNA:   3'- cuuaugUUCCGGCAgCUGUCACGGCa -5'
12024 3' -53.1 NC_003278.1 + 12083 0.72 0.360951
Target:  5'- cGAUGCAGGG-CGUCG-CGGUcGCCGUu -3'
miRNA:   3'- cUUAUGUUCCgGCAGCuGUCA-CGGCA- -5'
12024 3' -53.1 NC_003278.1 + 20578 0.73 0.317852
Target:  5'- cGAggGCGAGGCCG-CGAgGGUcGCCGc -3'
miRNA:   3'- -CUuaUGUUCCGGCaGCUgUCA-CGGCa -5'
12024 3' -53.1 NC_003278.1 + 30565 1.08 0.000991
Target:  5'- cGAAUACAAGGCCGUCGACAGUGCCGUg -3'
miRNA:   3'- -CUUAUGUUCCGGCAGCUGUCACGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.