miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12024 5' -59.2 NC_003278.1 + 26650 0.66 0.394341
Target:  5'- uCGCGUCCGCCAGggUagg--CGCCGa -3'
miRNA:   3'- uGUGCGGGCGGUCuuGggagaGUGGU- -5'
12024 5' -59.2 NC_003278.1 + 2783 0.66 0.394341
Target:  5'- uGCGCGa-CGCCAGAGCCCaugccgguggugUCgaCGCCGa -3'
miRNA:   3'- -UGUGCggGCGGUCUUGGG------------AGa-GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 3332 0.66 0.385222
Target:  5'- -aGCGCUCGCCAGuccagaauguguAGgCCUCaugCGCCAu -3'
miRNA:   3'- ugUGCGGGCGGUC------------UUgGGAGa--GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 32223 0.66 0.385222
Target:  5'- -aGCGCUUccgcgacuggGCCAGAccGCCCagCUCGCCGc -3'
miRNA:   3'- ugUGCGGG----------CGGUCU--UGGGa-GAGUGGU- -5'
12024 5' -59.2 NC_003278.1 + 31871 0.66 0.385222
Target:  5'- gGCGgGCgCCGaCCGGAugCCgugUUCAUCAg -3'
miRNA:   3'- -UGUgCG-GGC-GGUCUugGGa--GAGUGGU- -5'
12024 5' -59.2 NC_003278.1 + 13268 0.66 0.384318
Target:  5'- aGCAgGUCCGCCGGGgcgcugccguuGCCCUgggcggccugcacCgUCACCAc -3'
miRNA:   3'- -UGUgCGGGCGGUCU-----------UGGGA-------------G-AGUGGU- -5'
12024 5' -59.2 NC_003278.1 + 12912 0.66 0.367408
Target:  5'- aACAUGCUgGCCAGcGCCCagggcgCUgACCu -3'
miRNA:   3'- -UGUGCGGgCGGUCuUGGGa-----GAgUGGu -5'
12024 5' -59.2 NC_003278.1 + 35459 0.66 0.350168
Target:  5'- -aGCGCCCGCCA-AGCCUgCUgGCUg -3'
miRNA:   3'- ugUGCGGGCGGUcUUGGGaGAgUGGu -5'
12024 5' -59.2 NC_003278.1 + 2238 0.67 0.333512
Target:  5'- aACAUGCUgGCCAaGACCUUCaucccgCACCGc -3'
miRNA:   3'- -UGUGCGGgCGGUcUUGGGAGa-----GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 21875 0.68 0.279849
Target:  5'- uGCGCGCCCGCCugcAGGACCgggaguaACCAc -3'
miRNA:   3'- -UGUGCGGGCGG---UCUUGGgagag--UGGU- -5'
12024 5' -59.2 NC_003278.1 + 10493 0.68 0.265833
Target:  5'- cCGCGCCCucgaGCCAG-GCCCUCgugCugCc -3'
miRNA:   3'- uGUGCGGG----CGGUCuUGGGAGa--GugGu -5'
12024 5' -59.2 NC_003278.1 + 23163 0.68 0.25904
Target:  5'- -aGCGaCCGCCAGAgcGCCCUgcgCGCCGc -3'
miRNA:   3'- ugUGCgGGCGGUCU--UGGGAga-GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 23238 0.69 0.245881
Target:  5'- uACGCGCUCGCCAGGGgCCg---GCCGg -3'
miRNA:   3'- -UGUGCGGGCGGUCUUgGGagagUGGU- -5'
12024 5' -59.2 NC_003278.1 + 9351 0.7 0.188223
Target:  5'- aACACGCCaacugCGCCGaggccagcgcguGAGCCUUCUgCGCCAg -3'
miRNA:   3'- -UGUGCGG-----GCGGU------------CUUGGGAGA-GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 22878 0.72 0.151004
Target:  5'- gGCAgGCCCGCCAGcGCCggCgcgagCACCGg -3'
miRNA:   3'- -UGUgCGGGCGGUCuUGGgaGa----GUGGU- -5'
12024 5' -59.2 NC_003278.1 + 30600 1.08 0.00026
Target:  5'- cACACGCCCGCCAGAACCCUCUCACCAa -3'
miRNA:   3'- -UGUGCGGGCGGUCUUGGGAGAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.