miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12025 3' -61 NC_003278.1 + 2724 0.67 0.263422
Target:  5'- aGAACGgCCGCCUcgaauucgacgccGGCuggaccgaccugGCCCAgGCGCUg -3'
miRNA:   3'- gUUUGUgGGCGGA-------------CCG------------CGGGU-CGCGG- -5'
12025 3' -61 NC_003278.1 + 2753 0.66 0.299549
Target:  5'- --cGCACCCccgggaagaaCUGGCGCaCCAGCuGCg -3'
miRNA:   3'- guuUGUGGGcg--------GACCGCG-GGUCG-CGg -5'
12025 3' -61 NC_003278.1 + 2898 0.73 0.093894
Target:  5'- aGuuCAUCCGCaaGGUGaCCCAGCGCUa -3'
miRNA:   3'- gUuuGUGGGCGgaCCGC-GGGUCGCGG- -5'
12025 3' -61 NC_003278.1 + 3740 0.68 0.226133
Target:  5'- ---uCGCCCGCgaGGCGCUgAucgacGCGCUg -3'
miRNA:   3'- guuuGUGGGCGgaCCGCGGgU-----CGCGG- -5'
12025 3' -61 NC_003278.1 + 3931 0.73 0.091003
Target:  5'- -uAGCGCUggauccgCGCCUGGCGCUCaAGCuGCCg -3'
miRNA:   3'- guUUGUGG-------GCGGACCGCGGG-UCG-CGG- -5'
12025 3' -61 NC_003278.1 + 4234 0.66 0.314729
Target:  5'- --uGCugCCGCCcacccuCGCCCcucaguAGCGCCg -3'
miRNA:   3'- guuUGugGGCGGacc---GCGGG------UCGCGG- -5'
12025 3' -61 NC_003278.1 + 4517 0.67 0.253492
Target:  5'- gCGAGCACaucaagugggccuggCCGgCUGGUgaGUUCGGCGCCu -3'
miRNA:   3'- -GUUUGUG---------------GGCgGACCG--CGGGUCGCGG- -5'
12025 3' -61 NC_003278.1 + 4758 0.66 0.295107
Target:  5'- -cGACuccCCCGCCagccuggguaccgaGGCGCUcuccuuCAGCGCCa -3'
miRNA:   3'- guUUGu--GGGCGGa-------------CCGCGG------GUCGCGG- -5'
12025 3' -61 NC_003278.1 + 5216 0.66 0.299549
Target:  5'- --cACugCCGCCaccGGUGaCCgGGgGCCg -3'
miRNA:   3'- guuUGugGGCGGa--CCGC-GGgUCgCGG- -5'
12025 3' -61 NC_003278.1 + 5263 0.68 0.226133
Target:  5'- -cGACGCCUaCCUGGCGCagcuCGCCa -3'
miRNA:   3'- guUUGUGGGcGGACCGCGggucGCGG- -5'
12025 3' -61 NC_003278.1 + 5634 0.68 0.224951
Target:  5'- uCAAGCGCCaggcccucgacCGCCUgaugaucGGCuucaacgGCaCCAGCGCCg -3'
miRNA:   3'- -GUUUGUGG-----------GCGGA-------CCG-------CG-GGUCGCGG- -5'
12025 3' -61 NC_003278.1 + 6554 0.66 0.322534
Target:  5'- uGAcCACCuCGuCCUgGGCGCCCu-UGCCg -3'
miRNA:   3'- gUUuGUGG-GC-GGA-CCGCGGGucGCGG- -5'
12025 3' -61 NC_003278.1 + 6732 0.67 0.244503
Target:  5'- gAAACugCCGCCggucuucuGUGCCUugAGCGCg -3'
miRNA:   3'- gUUUGugGGCGGac------CGCGGG--UCGCGg -5'
12025 3' -61 NC_003278.1 + 7231 0.68 0.208947
Target:  5'- gCGAGCugCgGgCCUGGCGCCUugagaagaucGCgGCCg -3'
miRNA:   3'- -GUUUGugGgC-GGACCGCGGGu---------CG-CGG- -5'
12025 3' -61 NC_003278.1 + 7596 0.74 0.076885
Target:  5'- uCAuGCACCCGCUcGGCuauGCCguGUGCCg -3'
miRNA:   3'- -GUuUGUGGGCGGaCCG---CGGguCGCGG- -5'
12025 3' -61 NC_003278.1 + 8045 0.69 0.198125
Target:  5'- --uGC-CCUGCUcGGCGCCUGGCugGCCa -3'
miRNA:   3'- guuUGuGGGCGGaCCGCGGGUCG--CGG- -5'
12025 3' -61 NC_003278.1 + 8109 0.66 0.322534
Target:  5'- cCGGugGCCaGCCaGGCGCCgAGCa-- -3'
miRNA:   3'- -GUUugUGGgCGGaCCGCGGgUCGcgg -5'
12025 3' -61 NC_003278.1 + 8358 0.7 0.159606
Target:  5'- --cGCGCUgCGCCUGGUcuGCuaCCAGCGCUg -3'
miRNA:   3'- guuUGUGG-GCGGACCG--CG--GGUCGCGG- -5'
12025 3' -61 NC_003278.1 + 8388 0.7 0.164024
Target:  5'- -cGGCGCCCGCUUc-CGCCgCAGCGUCu -3'
miRNA:   3'- guUUGUGGGCGGAccGCGG-GUCGCGG- -5'
12025 3' -61 NC_003278.1 + 8449 0.69 0.177942
Target:  5'- gAGACGCUgCGgCggaagcgGGCGCCgCAGCGCUg -3'
miRNA:   3'- gUUUGUGG-GCgGa------CCGCGG-GUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.