miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12026 5' -54.5 NC_003278.1 + 13191 0.67 0.576477
Target:  5'- gGCCGAGGCaucGC-CGACgCGacCGUCGGc -3'
miRNA:   3'- gCGGUUCCGau-CGuGUUG-GU--GCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 21517 0.67 0.565259
Target:  5'- gGCCAAGGCcuggucAGCGCGGgC-CGUCaGGc -3'
miRNA:   3'- gCGGUUCCGa-----UCGUGUUgGuGCAG-CC- -5'
12026 5' -54.5 NC_003278.1 + 9667 0.67 0.565259
Target:  5'- gGCCAGcGcCUGGCGCAgcugcuGCCGCuGUUGGu -3'
miRNA:   3'- gCGGUUcC-GAUCGUGU------UGGUG-CAGCC- -5'
12026 5' -54.5 NC_003278.1 + 3195 0.67 0.554099
Target:  5'- aCGCCGAGGCUuuccagaaccuGCugAuguGCCAguuCGUCGa -3'
miRNA:   3'- -GCGGUUCCGAu----------CGugU---UGGU---GCAGCc -5'
12026 5' -54.5 NC_003278.1 + 21601 0.67 0.554099
Target:  5'- cCGUCGAGGCcGGCgACAGCC-UGaCGGc -3'
miRNA:   3'- -GCGGUUCCGaUCG-UGUUGGuGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 22938 0.68 0.543005
Target:  5'- uCGCCcAGGCgugucAGCAgGuUgGCGUCGGa -3'
miRNA:   3'- -GCGGuUCCGa----UCGUgUuGgUGCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 8869 0.68 0.541899
Target:  5'- gGUCGAGGCgAGCuccggcgGCGACgAgGUCGGc -3'
miRNA:   3'- gCGGUUCCGaUCG-------UGUUGgUgCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 12323 0.68 0.536383
Target:  5'- cCGCCGuggguaugaccgaccAGGCUGauGCccuugGCGAUCACGUCGa -3'
miRNA:   3'- -GCGGU---------------UCCGAU--CG-----UGUUGGUGCAGCc -5'
12026 5' -54.5 NC_003278.1 + 30126 0.68 0.531984
Target:  5'- gCGCCGAGGCccgcgugcuggAGUGCuuCCGCGagCGGc -3'
miRNA:   3'- -GCGGUUCCGa----------UCGUGuuGGUGCa-GCC- -5'
12026 5' -54.5 NC_003278.1 + 8039 0.68 0.531984
Target:  5'- gGCCGAGGCccaugaUGGCGcCGGCCGUGgCGGu -3'
miRNA:   3'- gCGGUUCCG------AUCGU-GUUGGUGCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 9618 0.68 0.521045
Target:  5'- gCGCCAGGcGCUGGC-CAuCCGCGa--- -3'
miRNA:   3'- -GCGGUUC-CGAUCGuGUuGGUGCagcc -5'
12026 5' -54.5 NC_003278.1 + 2363 0.68 0.521045
Target:  5'- gGUgAAGGCcucGGCACGGCCACccuggcgCGGg -3'
miRNA:   3'- gCGgUUCCGa--UCGUGUUGGUGca-----GCC- -5'
12026 5' -54.5 NC_003278.1 + 23424 0.68 0.521045
Target:  5'- aGCUccAGGCUGGUGaugUAACCGcCGUCGGc -3'
miRNA:   3'- gCGGu-UCCGAUCGU---GUUGGU-GCAGCC- -5'
12026 5' -54.5 NC_003278.1 + 17302 0.68 0.510196
Target:  5'- cCGCCAAGGCccgcuugGGCGugguACCGCGcauccUCGGc -3'
miRNA:   3'- -GCGGUUCCGa------UCGUgu--UGGUGC-----AGCC- -5'
12026 5' -54.5 NC_003278.1 + 13676 0.68 0.510196
Target:  5'- gCGCCAGGGCUucgGCGGCCAgGcgcucaaguUCGGu -3'
miRNA:   3'- -GCGGUUCCGAucgUGUUGGUgC---------AGCC- -5'
12026 5' -54.5 NC_003278.1 + 5682 0.68 0.510196
Target:  5'- gCGCCGcGGCUAcCAcCAACCGCGcCGc -3'
miRNA:   3'- -GCGGUuCCGAUcGU-GUUGGUGCaGCc -5'
12026 5' -54.5 NC_003278.1 + 10565 0.68 0.499442
Target:  5'- gCGCgAGGGC-AGCACGaggGCCugGcUCGa -3'
miRNA:   3'- -GCGgUUCCGaUCGUGU---UGGugC-AGCc -5'
12026 5' -54.5 NC_003278.1 + 21514 0.68 0.499442
Target:  5'- gCGCCGAGGCc--CugGGCCAgGcCGGc -3'
miRNA:   3'- -GCGGUUCCGaucGugUUGGUgCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 31515 0.68 0.499442
Target:  5'- gGCCAAGGCUgucgagugggccAGCuacauggcCAACCugG-CGGc -3'
miRNA:   3'- gCGGUUCCGA------------UCGu-------GUUGGugCaGCC- -5'
12026 5' -54.5 NC_003278.1 + 19633 0.68 0.488789
Target:  5'- gGCCGAGGUUGcggguGCugAGCCgGCGUUGc -3'
miRNA:   3'- gCGGUUCCGAU-----CGugUUGG-UGCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.