miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12027 5' -55.7 NC_003278.1 + 32101 0.66 0.570622
Target:  5'- -aGCCUgcucGGUGGCuUCGGCuacgccGUGGcggaaACCa -3'
miRNA:   3'- uaCGGAa---CCACCGuAGCUG------CACC-----UGG- -5'
12027 5' -55.7 NC_003278.1 + 14782 0.66 0.559409
Target:  5'- gAUGCCau--UGGCGUUGACG-GuGACCg -3'
miRNA:   3'- -UACGGaaccACCGUAGCUGCaC-CUGG- -5'
12027 5' -55.7 NC_003278.1 + 5851 0.66 0.548258
Target:  5'- -cGCCcUGGUGu--UCGACGUGGucagcaGCCu -3'
miRNA:   3'- uaCGGaACCACcguAGCUGCACC------UGG- -5'
12027 5' -55.7 NC_003278.1 + 13297 0.67 0.493715
Target:  5'- -cGUCguugaGGUaGGCGUCGACGaUGG-CCa -3'
miRNA:   3'- uaCGGaa---CCA-CCGUAGCUGC-ACCuGG- -5'
12027 5' -55.7 NC_003278.1 + 21157 0.67 0.493715
Target:  5'- -gGCCUgaacGGcGGgAUCGGCG-GGAUCa -3'
miRNA:   3'- uaCGGAa---CCaCCgUAGCUGCaCCUGG- -5'
12027 5' -55.7 NC_003278.1 + 32692 0.67 0.461168
Target:  5'- cGUGCCUUGGccgGGCGacUUGACGccgaugaUGGcGCCc -3'
miRNA:   3'- -UACGGAACCa--CCGU--AGCUGC-------ACC-UGG- -5'
12027 5' -55.7 NC_003278.1 + 2800 0.68 0.431776
Target:  5'- cAUGCC--GGUGGUGUCGACGccgauguagGuGACCc -3'
miRNA:   3'- -UACGGaaCCACCGUAGCUGCa--------C-CUGG- -5'
12027 5' -55.7 NC_003278.1 + 16648 0.68 0.421897
Target:  5'- -aGCCUcgucuccgagaGGUGGUggUGGCGUGcGACCg -3'
miRNA:   3'- uaCGGAa----------CCACCGuaGCUGCAC-CUGG- -5'
12027 5' -55.7 NC_003278.1 + 4768 0.68 0.412156
Target:  5'- -gGCCUUGccGGUGUCGGCGaacuugGGAUCg -3'
miRNA:   3'- uaCGGAACcaCCGUAGCUGCa-----CCUGG- -5'
12027 5' -55.7 NC_003278.1 + 12226 0.69 0.393096
Target:  5'- -gGUCacGGUGaGCGUCGACGUGaucGCCa -3'
miRNA:   3'- uaCGGaaCCAC-CGUAGCUGCACc--UGG- -5'
12027 5' -55.7 NC_003278.1 + 27504 0.72 0.255458
Target:  5'- -aGCCgaucUGGcugGGCAUCGACuG-GGGCCa -3'
miRNA:   3'- uaCGGa---ACCa--CCGUAGCUG-CaCCUGG- -5'
12027 5' -55.7 NC_003278.1 + 11880 0.73 0.217269
Target:  5'- cUGCCUUG--GGCAUCGcCGcGGGCCg -3'
miRNA:   3'- uACGGAACcaCCGUAGCuGCaCCUGG- -5'
12027 5' -55.7 NC_003278.1 + 31695 1.09 0.000485
Target:  5'- aAUGCCUUGGUGGCAUCGACGUGGACCc -3'
miRNA:   3'- -UACGGAACCACCGUAGCUGCACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.