Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12028 | 5' | -56.7 | NC_003278.1 | + | 12393 | 0.67 | 0.499393 |
Target: 5'- aGCGGGcgaGGGC-GCCgCCGGuauGGgcAUUCa -3' miRNA: 3'- -CGCCC---UCCGuUGG-GGCCu--CCuuUAGG- -5' |
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12028 | 5' | -56.7 | NC_003278.1 | + | 6025 | 0.68 | 0.409507 |
Target: 5'- aUGGGcGGCcuGCCgCCGGuGGAAGUgCCc -3' miRNA: 3'- cGCCCuCCGu-UGG-GGCCuCCUUUA-GG- -5' |
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12028 | 5' | -56.7 | NC_003278.1 | + | 28114 | 0.68 | 0.388192 |
Target: 5'- uGCGGGcgcggcaagugcGGCGACaCCUGGcacaucaAGGAAAUCUa -3' miRNA: 3'- -CGCCCu-----------CCGUUG-GGGCC-------UCCUUUAGG- -5' |
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12028 | 5' | -56.7 | NC_003278.1 | + | 9609 | 0.7 | 0.338608 |
Target: 5'- cGCGGGAaagGGCGGCCUC-GAGGg---CCg -3' miRNA: 3'- -CGCCCU---CCGUUGGGGcCUCCuuuaGG- -5' |
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12028 | 5' | -56.7 | NC_003278.1 | + | 27128 | 0.76 | 0.137201 |
Target: 5'- aGCGGaagcacGGGGUuuGGCCCuCGGAGGAgcgGAUCCg -3' miRNA: 3'- -CGCC------CUCCG--UUGGG-GCCUCCU---UUAGG- -5' |
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12028 | 5' | -56.7 | NC_003278.1 | + | 31833 | 1.14 | 0.0002 |
Target: 5'- gGCGGGAGGCAACCCCGGAGGAAAUCCg -3' miRNA: 3'- -CGCCCUCCGUUGGGGCCUCCUUUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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