miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12030 3' -48.3 NC_003278.1 + 32795 1.16 0.001131
Target:  5'- gCCCUGCCAAACACUCUAACGAGUUCCg -3'
miRNA:   3'- -GGGACGGUUUGUGAGAUUGCUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 21940 0.66 0.94889
Target:  5'- gCCUGC---ACACgCUGGCcaccaaGAGUUCCa -3'
miRNA:   3'- gGGACGguuUGUGaGAUUG------CUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 5567 0.66 0.94385
Target:  5'- aCCUacGCCAugcucGACGC-CUGGgccaaguucccCGAGUUCCa -3'
miRNA:   3'- gGGA--CGGU-----UUGUGaGAUU-----------GCUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 20267 0.66 0.938496
Target:  5'- gCCCUGCUcgGCAacgCUGGCG---UCCa -3'
miRNA:   3'- -GGGACGGuuUGUga-GAUUGCucaAGG- -5'
12030 3' -48.3 NC_003278.1 + 31205 0.67 0.926836
Target:  5'- gCCCgccGCCAGGCuGCUCcgggcuGCGAGUgCUg -3'
miRNA:   3'- -GGGa--CGGUUUG-UGAGau----UGCUCAaGG- -5'
12030 3' -48.3 NC_003278.1 + 7870 0.68 0.892134
Target:  5'- aCCaUGCCGGACAUUCcGACGGccgCCc -3'
miRNA:   3'- gGG-ACGGUUUGUGAGaUUGCUcaaGG- -5'
12030 3' -48.3 NC_003278.1 + 35462 0.68 0.884263
Target:  5'- gCCC-GCCAAGC-CUgCUGGCuGGGgUCCg -3'
miRNA:   3'- -GGGaCGGUUUGuGA-GAUUG-CUCaAGG- -5'
12030 3' -48.3 NC_003278.1 + 18116 0.68 0.876094
Target:  5'- gCCUgacGCCcAGCGCUCcccgGACGGGgagCCg -3'
miRNA:   3'- -GGGa--CGGuUUGUGAGa---UUGCUCaa-GG- -5'
12030 3' -48.3 NC_003278.1 + 19923 0.69 0.811291
Target:  5'- aCCCUGCC--GCugUCcAGCaAGUUCa -3'
miRNA:   3'- -GGGACGGuuUGugAGaUUGcUCAAGg -5'
12030 3' -48.3 NC_003278.1 + 21263 0.7 0.801072
Target:  5'- aCCUGCCGGcGCGCUUcAGCGAcUUCg -3'
miRNA:   3'- gGGACGGUU-UGUGAGaUUGCUcAAGg -5'
12030 3' -48.3 NC_003278.1 + 18850 0.7 0.801072
Target:  5'- aCCCUGCgCAAGCccucCUCUGGCGAa---- -3'
miRNA:   3'- -GGGACG-GUUUGu---GAGAUUGCUcaagg -5'
12030 3' -48.3 NC_003278.1 + 29421 0.7 0.769243
Target:  5'- gCCaacGCCGAAgACUUcuuCGAGUUCCa -3'
miRNA:   3'- -GGga-CGGUUUgUGAGauuGCUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 20727 0.73 0.607446
Target:  5'- aCCUGCUgcACAacaUC-GGCGAGUUCCu -3'
miRNA:   3'- gGGACGGuuUGUg--AGaUUGCUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 1477 0.79 0.299118
Target:  5'- aCCUGCugCAGGCGCgUCUGcauuggcGCGAGUUCCa -3'
miRNA:   3'- gGGACG--GUUUGUG-AGAU-------UGCUCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 28652 0.68 0.876094
Target:  5'- gCUUGCCGccacgGGCugUC--GCGAGUUCg -3'
miRNA:   3'- gGGACGGU-----UUGugAGauUGCUCAAGg -5'
12030 3' -48.3 NC_003278.1 + 17166 0.67 0.906957
Target:  5'- gCCUUGCCGAuggcagccuGCACguuggUGAUGAGUaCCg -3'
miRNA:   3'- -GGGACGGUU---------UGUGag---AUUGCUCAaGG- -5'
12030 3' -48.3 NC_003278.1 + 31790 0.67 0.906957
Target:  5'- aCCgGCCAGGCGCUCgaagucGCGGaggCCg -3'
miRNA:   3'- gGGaCGGUUUGUGAGau----UGCUcaaGG- -5'
12030 3' -48.3 NC_003278.1 + 23289 0.66 0.931062
Target:  5'- cCCCUGgCGAGCGCguagCUGagcguggcgcugccACGcuguaggcGGUUCCa -3'
miRNA:   3'- -GGGACgGUUUGUGa---GAU--------------UGC--------UCAAGG- -5'
12030 3' -48.3 NC_003278.1 + 32732 0.66 0.938496
Target:  5'- aCUUGCCGAA-ACUCUGgccGCGGGgaUCg -3'
miRNA:   3'- gGGACGGUUUgUGAGAU---UGCUCaaGG- -5'
12030 3' -48.3 NC_003278.1 + 1254 0.72 0.701571
Target:  5'- aCUCUGCCGAGCGgaCU--CGGGUUUCu -3'
miRNA:   3'- -GGGACGGUUUGUgaGAuuGCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.