Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12030 | 3' | -48.3 | NC_003278.1 | + | 7341 | 0.7 | 0.790648 |
Target: 5'- aCCUUGUCGgacGGCAC-CUgGGCGAGUUCg -3' miRNA: 3'- -GGGACGGU---UUGUGaGA-UUGCUCAAGg -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 29421 | 0.7 | 0.769243 |
Target: 5'- gCCaacGCCGAAgACUUcuuCGAGUUCCa -3' miRNA: 3'- -GGga-CGGUUUgUGAGauuGCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 1254 | 0.72 | 0.701571 |
Target: 5'- aCUCUGCCGAGCGgaCU--CGGGUUUCu -3' miRNA: 3'- -GGGACGGUUUGUgaGAuuGCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 20727 | 0.73 | 0.607446 |
Target: 5'- aCCUGCUgcACAacaUC-GGCGAGUUCCu -3' miRNA: 3'- gGGACGGuuUGUg--AGaUUGCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 1477 | 0.79 | 0.299118 |
Target: 5'- aCCUGCugCAGGCGCgUCUGcauuggcGCGAGUUCCa -3' miRNA: 3'- gGGACG--GUUUGUG-AGAU-------UGCUCAAGG- -5' |
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12030 | 3' | -48.3 | NC_003278.1 | + | 32795 | 1.16 | 0.001131 |
Target: 5'- gCCCUGCCAAACACUCUAACGAGUUCCg -3' miRNA: 3'- -GGGACGGUUUGUGAGAUUGCUCAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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