miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12030 5' -59.1 NC_003278.1 + 29878 0.66 0.392635
Target:  5'- cGGcGCCGCCG-GCGCGGcuguugucgcuGCGGUCGg -3'
miRNA:   3'- aCCcUGGCGGUgCGUGUU-----------CGCCAGUg -5'
12030 5' -59.1 NC_003278.1 + 16945 0.66 0.380833
Target:  5'- --aGGCUGCCGCGCGCGcggcgaaggggcgaGGCGGgaaGCu -3'
miRNA:   3'- accCUGGCGGUGCGUGU--------------UCGCCag-UG- -5'
12030 5' -59.1 NC_003278.1 + 19410 0.66 0.357091
Target:  5'- aGGG--CGCCGCGCugGGuGCGGaaggCGCg -3'
miRNA:   3'- aCCCugGCGGUGCGugUU-CGCCa---GUG- -5'
12030 5' -59.1 NC_003278.1 + 7847 0.66 0.357091
Target:  5'- cGaGGACCGCCuCGguCAcgccGGCGGU-GCg -3'
miRNA:   3'- aC-CCUGGCGGuGCguGU----UCGCCAgUG- -5'
12030 5' -59.1 NC_003278.1 + 31796 0.67 0.348565
Target:  5'- cGGGACaccgGCCAgGCGCucGaaGUCGCg -3'
miRNA:   3'- aCCCUGg---CGGUgCGUGuuCgcCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 14776 0.67 0.348565
Target:  5'- cUGGG-CgGCUacggcaucacggACGCACugcaugccagcgAGGCGGUCACu -3'
miRNA:   3'- -ACCCuGgCGG------------UGCGUG------------UUCGCCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 5133 0.67 0.340186
Target:  5'- cGGGACCacaGCCAacaGCAgcGGCccccGGUCACc -3'
miRNA:   3'- aCCCUGG---CGGUg--CGUguUCG----CCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 5196 0.67 0.323868
Target:  5'- gGGGGCCGCUGCuGUugGcuGUGGUCcCg -3'
miRNA:   3'- aCCCUGGCGGUG-CGugUu-CGCCAGuG- -5'
12030 5' -59.1 NC_003278.1 + 20586 0.67 0.315144
Target:  5'- cUGGaacuGGCCGCCcucgacgGCGCGCAucagggugccgaAGCuGGUCACc -3'
miRNA:   3'- -ACC----CUGGCGG-------UGCGUGU------------UCG-CCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 14701 0.68 0.293002
Target:  5'- gUGGGuGCCGgCACcUACcguGCGGUCACc -3'
miRNA:   3'- -ACCC-UGGCgGUGcGUGuu-CGCCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 31849 0.68 0.293002
Target:  5'- gGaGGAaauCCGCCGCGcCGCcGGCGGgCGCc -3'
miRNA:   3'- aC-CCU---GGCGGUGC-GUGuUCGCCaGUG- -5'
12030 5' -59.1 NC_003278.1 + 28491 0.68 0.285654
Target:  5'- gUGGGcACCaCCAgacgcCGCGCGGGCuGUCGCc -3'
miRNA:   3'- -ACCC-UGGcGGU-----GCGUGUUCGcCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 23231 0.68 0.264482
Target:  5'- cGcGGGCgGCgCGCaggGCGCucuGGCGGUCGCu -3'
miRNA:   3'- aC-CCUGgCG-GUG---CGUGu--UCGCCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 21411 0.69 0.257713
Target:  5'- cGGcGCCGCCgACGCGCuGGaCGG-CGCg -3'
miRNA:   3'- aCCcUGGCGG-UGCGUGuUC-GCCaGUG- -5'
12030 5' -59.1 NC_003278.1 + 6363 0.7 0.208569
Target:  5'- gGGGcagugGCCGCCGCcucUugAgcGGCGGUCACg -3'
miRNA:   3'- aCCC-----UGGCGGUGc--GugU--UCGCCAGUG- -5'
12030 5' -59.1 NC_003278.1 + 12167 0.7 0.202482
Target:  5'- gUGGuACCGCCggcgggaagaacuGCGCGCAGGUGGUgGg -3'
miRNA:   3'- -ACCcUGGCGG-------------UGCGUGUUCGCCAgUg -5'
12030 5' -59.1 NC_003278.1 + 23265 0.7 0.192331
Target:  5'- gUGGcGCUGCCACGCuguAGGCGGUucCACu -3'
miRNA:   3'- -ACCcUGGCGGUGCGug-UUCGCCA--GUG- -5'
12030 5' -59.1 NC_003278.1 + 32832 1.08 0.00025
Target:  5'- uUGGGACCGCCACGCACAAGCGGUCACc -3'
miRNA:   3'- -ACCCUGGCGGUGCGUGUUCGCCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.