miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12031 3' -56.3 NC_003278.1 + 33031 1.08 0.000529
Target:  5'- gCAUGCCGAAGGCGAACGACCGGCUGAc -3'
miRNA:   3'- -GUACGGCUUCCGCUUGCUGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 17434 0.76 0.123655
Target:  5'- -uUGCUGGGcgauGGCGAugagugcgguaGCGACCGGCUGGg -3'
miRNA:   3'- guACGGCUU----CCGCU-----------UGCUGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 16632 0.75 0.155229
Target:  5'- gGUGgUGguGGCGuGCGACCGGCUGu -3'
miRNA:   3'- gUACgGCuuCCGCuUGCUGGCCGACu -5'
12031 3' -56.3 NC_003278.1 + 19022 0.74 0.181506
Target:  5'- cCAUGCCGGuggccucgggcucGGUGAugguCGGCUGGCUGAu -3'
miRNA:   3'- -GUACGGCUu------------CCGCUu---GCUGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 30138 0.73 0.204845
Target:  5'- gCGUGCUGGAGuGCuuccGCGAgCGGCUGAa -3'
miRNA:   3'- -GUACGGCUUC-CGcu--UGCUgGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 26814 0.73 0.209928
Target:  5'- aCAUGCCGccguauAGGUGGGCGACauacucggggaagUGGCUGGu -3'
miRNA:   3'- -GUACGGCu-----UCCGCUUGCUG-------------GCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 19186 0.72 0.222213
Target:  5'- --cGCCGAuGGCGAAUGACCugcaGCUGc -3'
miRNA:   3'- guaCGGCUuCCGCUUGCUGGc---CGACu -5'
12031 3' -56.3 NC_003278.1 + 11849 0.72 0.228275
Target:  5'- uGUGuuGAccGGCGAccuGCuGACCGGCUGGc -3'
miRNA:   3'- gUACggCUu-CCGCU---UG-CUGGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 15172 0.71 0.274695
Target:  5'- gAUGCCGGAGGUGAuuuuuCCGGCa-- -3'
miRNA:   3'- gUACGGCUUCCGCUugcu-GGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 14226 0.71 0.281911
Target:  5'- --cGCCGgcGGCGcgcccGGCGAgaCGGCUGAc -3'
miRNA:   3'- guaCGGCuuCCGC-----UUGCUg-GCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 21429 0.71 0.288534
Target:  5'- --cGCCGAccuGGGCGGguucaccAUGGCCGGcCUGGc -3'
miRNA:   3'- guaCGGCU---UCCGCU-------UGCUGGCC-GACU- -5'
12031 3' -56.3 NC_003278.1 + 31711 0.7 0.296794
Target:  5'- -uUGCCGAcccGCGGACGcgcCCGGUUGAa -3'
miRNA:   3'- guACGGCUuc-CGCUUGCu--GGCCGACU- -5'
12031 3' -56.3 NC_003278.1 + 12322 0.69 0.353641
Target:  5'- --cGCCGuGGGUauGAcCGACCaGGCUGAu -3'
miRNA:   3'- guaCGGCuUCCG--CUuGCUGG-CCGACU- -5'
12031 3' -56.3 NC_003278.1 + 10410 0.67 0.446322
Target:  5'- uCAUGCuCGAgacgccgcagaucAGGCGccCGGCCaauGGCUGAc -3'
miRNA:   3'- -GUACG-GCU-------------UCCGCuuGCUGG---CCGACU- -5'
12031 3' -56.3 NC_003278.1 + 33694 0.67 0.457437
Target:  5'- aAUGCCGAAcGGC---UGGCCGGCa-- -3'
miRNA:   3'- gUACGGCUU-CCGcuuGCUGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 20044 0.67 0.467669
Target:  5'- --aGCCGcGGGCGAcauggaccucgGCGACaCuGCUGAc -3'
miRNA:   3'- guaCGGCuUCCGCU-----------UGCUG-GcCGACU- -5'
12031 3' -56.3 NC_003278.1 + 7793 0.67 0.467669
Target:  5'- gCGUGaCCGAggcgguccucgAGGCGAaccACGGCCuGGCcGAc -3'
miRNA:   3'- -GUAC-GGCU-----------UCCGCU---UGCUGG-CCGaCU- -5'
12031 3' -56.3 NC_003278.1 + 30497 0.67 0.488477
Target:  5'- --cGCCaGAAGGUGGcCGACgCGGCa-- -3'
miRNA:   3'- guaCGG-CUUCCGCUuGCUG-GCCGacu -5'
12031 3' -56.3 NC_003278.1 + 32571 0.66 0.50971
Target:  5'- --cGCCGuucguGGGGCugcuGCGACCGGCg-- -3'
miRNA:   3'- guaCGGC-----UUCCGcu--UGCUGGCCGacu -5'
12031 3' -56.3 NC_003278.1 + 22836 0.66 0.50971
Target:  5'- -uUGCCGAGGGCGAugucggugagcACGucGCCcagcgucuucgGGCUGc -3'
miRNA:   3'- guACGGCUUCCGCU-----------UGC--UGG-----------CCGACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.