Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 12031 | 3' | -56.3 | NC_003278.1 | + | 14226 | 0.71 | 0.281911 |
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Target: 5'- --cGCCGgcGGCGcgcccGGCGAgaCGGCUGAc -3' miRNA: 3'- guaCGGCuuCCGC-----UUGCUg-GCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 15172 | 0.71 | 0.274695 |
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Target: 5'- gAUGCCGGAGGUGAuuuuuCCGGCa-- -3' miRNA: 3'- gUACGGCUUCCGCUugcu-GGCCGacu -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 11849 | 0.72 | 0.228275 |
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Target: 5'- uGUGuuGAccGGCGAccuGCuGACCGGCUGGc -3' miRNA: 3'- gUACggCUu-CCGCU---UG-CUGGCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 19186 | 0.72 | 0.222213 |
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Target: 5'- --cGCCGAuGGCGAAUGACCugcaGCUGc -3' miRNA: 3'- guaCGGCUuCCGCUUGCUGGc---CGACu -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 26814 | 0.73 | 0.209928 |
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Target: 5'- aCAUGCCGccguauAGGUGGGCGACauacucggggaagUGGCUGGu -3' miRNA: 3'- -GUACGGCu-----UCCGCUUGCUG-------------GCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 30138 | 0.73 | 0.204845 |
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Target: 5'- gCGUGCUGGAGuGCuuccGCGAgCGGCUGAa -3' miRNA: 3'- -GUACGGCUUC-CGcu--UGCUgGCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 19022 | 0.74 | 0.181506 |
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Target: 5'- cCAUGCCGGuggccucgggcucGGUGAugguCGGCUGGCUGAu -3' miRNA: 3'- -GUACGGCUu------------CCGCUu---GCUGGCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 16632 | 0.75 | 0.155229 |
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Target: 5'- gGUGgUGguGGCGuGCGACCGGCUGu -3' miRNA: 3'- gUACgGCuuCCGCuUGCUGGCCGACu -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 17434 | 0.76 | 0.123655 |
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Target: 5'- -uUGCUGGGcgauGGCGAugagugcgguaGCGACCGGCUGGg -3' miRNA: 3'- guACGGCUU----CCGCU-----------UGCUGGCCGACU- -5' |
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| 12031 | 3' | -56.3 | NC_003278.1 | + | 33031 | 1.08 | 0.000529 |
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Target: 5'- gCAUGCCGAAGGCGAACGACCGGCUGAc -3' miRNA: 3'- -GUACGGCUUCCGCUUGCUGGCCGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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