Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12032 | 3' | -61.8 | NC_003278.1 | + | 23016 | 0.68 | 0.20479 |
Target: 5'- cCGCUGGCAGUCUU-GCCG-CCaccGGCCg -3' miRNA: 3'- -GCGACCGUUGGGAcCGGCaGGa--CCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 19046 | 0.68 | 0.201572 |
Target: 5'- gGCgaaGGCAGCCucccugauCgcguagaaaacgccaUGGCCGaCCUGGCCg -3' miRNA: 3'- gCGa--CCGUUGG--------G---------------ACCGGCaGGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 3922 | 0.68 | 0.199452 |
Target: 5'- cCGCccUGGUAGCgCUGGauCCGcgCCUGGCg -3' miRNA: 3'- -GCG--ACCGUUGgGACC--GGCa-GGACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 31575 | 0.68 | 0.199452 |
Target: 5'- aGCUGGCccacucgacAGCCUUGGCC-UgUUGGCg -3' miRNA: 3'- gCGACCG---------UUGGGACCGGcAgGACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 21623 | 0.69 | 0.184158 |
Target: 5'- uGCUGGCcAUgCUGGgCGaCCUGGgCa -3' miRNA: 3'- gCGACCGuUGgGACCgGCaGGACCgG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 7787 | 0.69 | 0.183666 |
Target: 5'- cCGCcGGCGugACCgaGGCgGUCCUcgaggcgaaccacGGCCu -3' miRNA: 3'- -GCGaCCGU--UGGgaCCGgCAGGA-------------CCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 20823 | 0.69 | 0.179295 |
Target: 5'- cCGUUGGCAGCCUUGccaucacccucGCCGgcaUUCUcGGCCc -3' miRNA: 3'- -GCGACCGUUGGGAC-----------CGGC---AGGA-CCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 12986 | 0.69 | 0.174546 |
Target: 5'- aGCUGGuCGaggucagcGCCCUGGgCG--CUGGCCa -3' miRNA: 3'- gCGACC-GU--------UGGGACCgGCagGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 4725 | 0.7 | 0.156655 |
Target: 5'- ---cGGCAagGCCUacuUGGUCGgCCUGGCCa -3' miRNA: 3'- gcgaCCGU--UGGG---ACCGGCaGGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 13740 | 0.7 | 0.154119 |
Target: 5'- uCGCUGGgaCAGCaCCUGGCCGgagcgugugaagcgCCaGGUCa -3' miRNA: 3'- -GCGACC--GUUG-GGACCGGCa-------------GGaCCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 5049 | 0.7 | 0.148345 |
Target: 5'- uGCUcGGCGAUcgcuucgacggCCUcGCCGaCCUGGCCg -3' miRNA: 3'- gCGA-CCGUUG-----------GGAcCGGCaGGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 9610 | 0.7 | 0.140439 |
Target: 5'- uCGCgggaaagGGCGGCCUcgagGGCCGUgauggugccggCCUGGCg -3' miRNA: 3'- -GCGa------CCGUUGGGa---CCGGCA-----------GGACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 8723 | 0.71 | 0.13292 |
Target: 5'- uCGgUGGCGGCgCCgaagUGGCCGUCCucguagagguUGGCg -3' miRNA: 3'- -GCgACCGUUG-GG----ACCGGCAGG----------ACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 14945 | 0.71 | 0.129302 |
Target: 5'- gGCUGGCAguggcugcguuGCCCguaaucgaGGCCGguaguagCCcGGCCg -3' miRNA: 3'- gCGACCGU-----------UGGGa-------CCGGCa------GGaCCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 12641 | 0.71 | 0.129302 |
Target: 5'- gGgUGGCGucaaucucaugaGCaCCUGGCCGgccaggUUCUGGCCg -3' miRNA: 3'- gCgACCGU------------UG-GGACCGGC------AGGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 14642 | 0.71 | 0.129302 |
Target: 5'- cCGC-GGCAACCUUcGCCGUCCccaguccugggUGGCg -3' miRNA: 3'- -GCGaCCGUUGGGAcCGGCAGG-----------ACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 11874 | 0.71 | 0.129302 |
Target: 5'- gGCUGGCuGCCUUGGgcaUCG-CCgcgGGCCg -3' miRNA: 3'- gCGACCGuUGGGACC---GGCaGGa--CCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 21022 | 0.71 | 0.122336 |
Target: 5'- gGcCUGGCcgccAACCC-GGUgGUCCUGGCa -3' miRNA: 3'- gC-GACCG----UUGGGaCCGgCAGGACCGg -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 13693 | 0.71 | 0.118985 |
Target: 5'- uGCccGGUcGCCCUucuGCCGUaCCUGGCCu -3' miRNA: 3'- gCGa-CCGuUGGGAc--CGGCA-GGACCGG- -5' |
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12032 | 3' | -61.8 | NC_003278.1 | + | 21532 | 0.72 | 0.10348 |
Target: 5'- aGCgGGCcGgCCUGGCCGgcgCCgaGGCCc -3' miRNA: 3'- gCGaCCGuUgGGACCGGCa--GGa-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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