miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12033 3' -50.6 NC_003278.1 + 33824 1.08 0.001606
Target:  5'- aUAUCAAACGCAACCAGAUUGCCGCCAg -3'
miRNA:   3'- -AUAGUUUGCGUUGGUCUAACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 30250 0.67 0.740364
Target:  5'- gGUCGAcGCGCugcGCCuGGUggUGCCGCUg -3'
miRNA:   3'- aUAGUU-UGCGu--UGGuCUA--ACGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 17166 0.66 0.795379
Target:  5'- --gCAAuCGcCGACCAGGccaacGCCGCCAc -3'
miRNA:   3'- auaGUUuGC-GUUGGUCUaa---CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 6010 0.66 0.805834
Target:  5'- cUGUCGcagaAGCGCAugGgCGGccUGCCGCCGg -3'
miRNA:   3'- -AUAGU----UUGCGU--UgGUCuaACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 2014 0.66 0.816075
Target:  5'- ---aGAACGUcuCCAGAUcggUGCCGCg- -3'
miRNA:   3'- auagUUUGCGuuGGUCUA---ACGGCGgu -5'
12033 3' -50.6 NC_003278.1 + 17266 0.66 0.816075
Target:  5'- --cCGAugGCAaguacACCGGcAUgaaggccuugcuUGCCGCCAa -3'
miRNA:   3'- auaGUUugCGU-----UGGUC-UA------------ACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 29893 0.66 0.816075
Target:  5'- cGUUggGCGUgaccGGCCAGAagaCCGCCGg -3'
miRNA:   3'- aUAGuuUGCG----UUGGUCUaacGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 2553 0.66 0.825096
Target:  5'- gAUC-GGCGUGGCCGGuguugucGUUGCgGCCGg -3'
miRNA:   3'- aUAGuUUGCGUUGGUC-------UAACGgCGGU- -5'
12033 3' -50.6 NC_003278.1 + 22331 0.66 0.826087
Target:  5'- -cUgAGACGCAuCCuguGAUcgaUGCCGCCc -3'
miRNA:   3'- auAgUUUGCGUuGGu--CUA---ACGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 585 0.67 0.739224
Target:  5'- --aCGAAgGCAGCCAagugauuGAacUUGCCGUCAa -3'
miRNA:   3'- auaGUUUgCGUUGGU-------CU--AACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 31872 0.67 0.717352
Target:  5'- --gCGGGCGcCGACCGGA-UGCCGUg- -3'
miRNA:   3'- auaGUUUGC-GUUGGUCUaACGGCGgu -5'
12033 3' -50.6 NC_003278.1 + 4446 0.75 0.291099
Target:  5'- cAUCGAGCGCGACUGGAUcgagcagaugGCCGCgCAg -3'
miRNA:   3'- aUAGUUUGCGUUGGUCUAa---------CGGCG-GU- -5'
12033 3' -50.6 NC_003278.1 + 12686 0.75 0.307302
Target:  5'- cAUCGAcCuCAGCCAG-UUGCCGCCAc -3'
miRNA:   3'- aUAGUUuGcGUUGGUCuAACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 10261 0.73 0.408494
Target:  5'- cGUCAAGCGCcGCgAGGaugGCCGCUAc -3'
miRNA:   3'- aUAGUUUGCGuUGgUCUaa-CGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 28840 0.7 0.56303
Target:  5'- cGUCAugagGGCGCGcugcugaucGCCgAGAgUGCCGCCGa -3'
miRNA:   3'- aUAGU----UUGCGU---------UGG-UCUaACGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 16623 0.7 0.58668
Target:  5'- gAUCGAGCGCGAUUGGcgcGaCCGCCAg -3'
miRNA:   3'- aUAGUUUGCGUUGGUCuaaC-GGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 15584 0.7 0.58668
Target:  5'- cGUCGAaggcaACGCGACgCAGAUUGCaaccggcuaUGCCGg -3'
miRNA:   3'- aUAGUU-----UGCGUUG-GUCUAACG---------GCGGU- -5'
12033 3' -50.6 NC_003278.1 + 9056 0.68 0.658332
Target:  5'- --gCGAACGCucGCCAGAUcgacgauaccGCCGCCc -3'
miRNA:   3'- auaGUUUGCGu-UGGUCUAa---------CGGCGGu -5'
12033 3' -50.6 NC_003278.1 + 21093 0.68 0.693941
Target:  5'- gAUCuauCGCAACUGGGacGCCGUCAa -3'
miRNA:   3'- aUAGuuuGCGUUGGUCUaaCGGCGGU- -5'
12033 3' -50.6 NC_003278.1 + 3706 0.72 0.429004
Target:  5'- ---gGGGCGCAACCAGAUauuccUGUCgGCCAg -3'
miRNA:   3'- auagUUUGCGUUGGUCUA-----ACGG-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.