miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 3' -57.9 NC_003278.1 + 22658 0.68 0.337831
Target:  5'- cGCUGUCACuCCagC-CCAGCCAGAg- -3'
miRNA:   3'- -CGGCGGUGuGGaaGcGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 25716 0.68 0.329572
Target:  5'- aCUGCC-CugCUUaucUGCCuuAGCCAGAUGa -3'
miRNA:   3'- cGGCGGuGugGAA---GCGG--UCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 22084 0.68 0.32631
Target:  5'- cGUCGCCGCgACCgacgaacuggcgCGCCGGCUGGGc- -3'
miRNA:   3'- -CGGCGGUG-UGGaa----------GCGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 13516 0.68 0.305694
Target:  5'- cGCCGCCACACCagcccaggCGCCcuacugcaCCGGAa- -3'
miRNA:   3'- -CGGCGGUGUGGaa------GCGGuc------GGUCUac -5'
12034 3' -57.9 NC_003278.1 + 8791 0.69 0.290525
Target:  5'- uGCUGCagaACGCCgaccucgUCGCC-GCCGGAg- -3'
miRNA:   3'- -CGGCGg--UGUGGa------AGCGGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 21214 0.69 0.290525
Target:  5'- gGCCugauguaCCGCGCCUUCGCCGGCg----- -3'
miRNA:   3'- -CGGc------GGUGUGGAAGCGGUCGgucuac -5'
12034 3' -57.9 NC_003278.1 + 4605 0.69 0.28171
Target:  5'- cGUCGCCauagGCGCCgaacucaccaGCCGGCCAGGc- -3'
miRNA:   3'- -CGGCGG----UGUGGaag-------CGGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 13676 0.69 0.275953
Target:  5'- -gCGCCAgGgCUUCGgCGGCCAGGc- -3'
miRNA:   3'- cgGCGGUgUgGAAGCgGUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 23150 0.7 0.255198
Target:  5'- -gCGCCACACCUacagCGaCC-GCCAGAg- -3'
miRNA:   3'- cgGCGGUGUGGAa---GC-GGuCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 5443 0.7 0.229537
Target:  5'- cGUCaGCgGCACCaUCGCCAGCCGuaccGAUa -3'
miRNA:   3'- -CGG-CGgUGUGGaAGCGGUCGGU----CUAc -5'
12034 3' -57.9 NC_003278.1 + 21842 0.7 0.223472
Target:  5'- uGUCGCUGC-CCg-CGCCGGCCuGGAUGg -3'
miRNA:   3'- -CGGCGGUGuGGaaGCGGUCGG-UCUAC- -5'
12034 3' -57.9 NC_003278.1 + 29444 0.7 0.223472
Target:  5'- cGCCGCCGCGCac-CGCCAcgucGcCCAGAa- -3'
miRNA:   3'- -CGGCGGUGUGgaaGCGGU----C-GGUCUac -5'
12034 3' -57.9 NC_003278.1 + 21528 0.71 0.217543
Target:  5'- gGCCgGCCugGCCggCGCCgaggcccugGGCCAGGc- -3'
miRNA:   3'- -CGG-CGGugUGGaaGCGG---------UCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 23483 0.71 0.195162
Target:  5'- aGUCGCC--GCCggugUCGUCGGCCAGGUc -3'
miRNA:   3'- -CGGCGGugUGGa---AGCGGUCGGUCUAc -5'
12034 3' -57.9 NC_003278.1 + 14107 0.71 0.195162
Target:  5'- cGUCGCCAgGCCgUgGCgGGCCAGGa- -3'
miRNA:   3'- -CGGCGGUgUGGaAgCGgUCGGUCUac -5'
12034 3' -57.9 NC_003278.1 + 12559 0.72 0.184744
Target:  5'- aCCgGCCAgaACCUg-GCCGGCCAGGUGc -3'
miRNA:   3'- cGG-CGGUg-UGGAagCGGUCGGUCUAC- -5'
12034 3' -57.9 NC_003278.1 + 21538 0.72 0.179721
Target:  5'- gGCCGUCAgGCUgUCGCCGGCCucGAc- -3'
miRNA:   3'- -CGGCGGUgUGGaAGCGGUCGGu-CUac -5'
12034 3' -57.9 NC_003278.1 + 1662 0.72 0.17482
Target:  5'- aGCCGCgACgACCacUCGCCGGCCuGcgGg -3'
miRNA:   3'- -CGGCGgUG-UGGa-AGCGGUCGGuCuaC- -5'
12034 3' -57.9 NC_003278.1 + 9080 0.72 0.165374
Target:  5'- aCCGCCGC-CCUggaGUCGGCCAGuUGg -3'
miRNA:   3'- cGGCGGUGuGGAag-CGGUCGGUCuAC- -5'
12034 3' -57.9 NC_003278.1 + 6469 0.72 0.165374
Target:  5'- cGCUGCCuuGCCUUCGUCGGaUUGGAUGu -3'
miRNA:   3'- -CGGCGGugUGGAAGCGGUC-GGUCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.