miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12034 5' -54.2 NC_003278.1 + 13186 0.66 0.695283
Target:  5'- aGGCAUCGCCgACgcgaCCGuc-GGcggCGCg -3'
miRNA:   3'- -CCGUAGCGG-UGag--GGCuuaCCua-GCG- -5'
12034 5' -54.2 NC_003278.1 + 2855 0.66 0.684087
Target:  5'- cGGCGUCGaCAC-CaCCGGcAUGGGcucuggcgUCGCg -3'
miRNA:   3'- -CCGUAGCgGUGaG-GGCU-UACCU--------AGCG- -5'
12034 5' -54.2 NC_003278.1 + 20899 0.66 0.684087
Target:  5'- cGGCAuUCGCCug-CCCGGucuGAUCGg -3'
miRNA:   3'- -CCGU-AGCGGugaGGGCUuacCUAGCg -5'
12034 5' -54.2 NC_003278.1 + 8735 0.66 0.638891
Target:  5'- uGGCAUCGCUgg-CCCGAAgacccUGGc-CGCc -3'
miRNA:   3'- -CCGUAGCGGugaGGGCUU-----ACCuaGCG- -5'
12034 5' -54.2 NC_003278.1 + 23182 0.68 0.537789
Target:  5'- uGCG-CGCCGCccgCgCCGAGUGGAacCGCc -3'
miRNA:   3'- cCGUaGCGGUGa--G-GGCUUACCUa-GCG- -5'
12034 5' -54.2 NC_003278.1 + 21845 0.68 0.53669
Target:  5'- cGGUGUCGCUGCccgcgccggCCUGGAUGGugauguaguaaguGUCGCc -3'
miRNA:   3'- -CCGUAGCGGUGa--------GGGCUUACC-------------UAGCG- -5'
12034 5' -54.2 NC_003278.1 + 26833 0.69 0.515956
Target:  5'- gGGCGUCGCCACcgCCaucaGGcgcgGUGaGGUCGa -3'
miRNA:   3'- -CCGUAGCGGUGa-GGg---CU----UAC-CUAGCg -5'
12034 5' -54.2 NC_003278.1 + 34815 0.7 0.442734
Target:  5'- --aAUCGuUCACUCCUGAgaGUGGGUCGa -3'
miRNA:   3'- ccgUAGC-GGUGAGGGCU--UACCUAGCg -5'
12034 5' -54.2 NC_003278.1 + 18224 0.7 0.421923
Target:  5'- cGGCAUgGCCaugguaggGCUCuCCGGgaaucagGUGGGUCGg -3'
miRNA:   3'- -CCGUAgCGG--------UGAG-GGCU-------UACCUAGCg -5'
12034 5' -54.2 NC_003278.1 + 2964 0.71 0.403611
Target:  5'- cGGUGUCGCCcgUCUCGGcgGGGUCa- -3'
miRNA:   3'- -CCGUAGCGGugAGGGCUuaCCUAGcg -5'
12034 5' -54.2 NC_003278.1 + 29322 0.71 0.403611
Target:  5'- uGCG-CGCCGCUgCCGGugaaGAUCGCa -3'
miRNA:   3'- cCGUaGCGGUGAgGGCUuac-CUAGCG- -5'
12034 5' -54.2 NC_003278.1 + 26731 0.71 0.357901
Target:  5'- cGGCAccaGCCACUucCCCGAGUauGUCGCc -3'
miRNA:   3'- -CCGUag-CGGUGA--GGGCUUAccUAGCG- -5'
12034 5' -54.2 NC_003278.1 + 14986 0.76 0.190514
Target:  5'- uGCAUCGCCGCUCgCGcugagcguGAUGGG-CGCu -3'
miRNA:   3'- cCGUAGCGGUGAGgGC--------UUACCUaGCG- -5'
12034 5' -54.2 NC_003278.1 + 11887 0.8 0.101698
Target:  5'- gGGCAUCGCCGCgggCCggcgccgaccgCGAAUGGAaCGCc -3'
miRNA:   3'- -CCGUAGCGGUGa--GG-----------GCUUACCUaGCG- -5'
12034 5' -54.2 NC_003278.1 + 34610 1.15 0.000297
Target:  5'- cGGCAUCGCCACUCCCGAAUGGAUCGCg -3'
miRNA:   3'- -CCGUAGCGGUGAGGGCUUACCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.