Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12036 | 5' | -55.6 | NC_003287.2 | + | 2310 | 0.68 | 0.080454 |
Target: 5'- gAACCACCACcagAgCCGCCGCcaGCaUUGAc -3' miRNA: 3'- aUUGGUGGUG---UgGGCGGCG--CG-AAUUa -5' |
|||||||
12036 | 5' | -55.6 | NC_003287.2 | + | 5536 | 0.73 | 0.030189 |
Target: 5'- gUGACCGCUACACuuGCCaGCGCc---- -3' miRNA: 3'- -AUUGGUGGUGUGggCGG-CGCGaauua -5' |
|||||||
12036 | 5' | -55.6 | NC_003287.2 | + | 5533 | 1.05 | 0.000061 |
Target: 5'- gUAACCACCACACCCGCCGCGCUUAAUg -3' miRNA: 3'- -AUUGGUGGUGUGGGCGGCGCGAAUUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home