miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1205 3' -47.4 NC_001132.2 + 2020 0.66 0.999935
Target:  5'- -gACG-AGCGAcGggGUcGGCGUCCUa -3'
miRNA:   3'- ugUGCuUUGCU-CuuUAuCUGCAGGGg -5'
1205 3' -47.4 NC_001132.2 + 2427 0.67 0.999607
Target:  5'- -aACGAAgugucccGCGGGguAUGG-CGUCUCCg -3'
miRNA:   3'- ugUGCUU-------UGCUCuuUAUCuGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 6241 0.69 0.998038
Target:  5'- aACGCGAuGGCGccAGAUGGACGauaUCCCUu -3'
miRNA:   3'- -UGUGCU-UUGCucUUUAUCUGC---AGGGG- -5'
1205 3' -47.4 NC_001132.2 + 6374 0.67 0.999736
Target:  5'- aACACGAGGCGcGGAcgucaacggaguucGUGGuucucguACGUCUCCu -3'
miRNA:   3'- -UGUGCUUUGCuCUU--------------UAUC-------UGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 8316 0.66 0.999935
Target:  5'- uCGCGAAGaGAGAAGUca--GUCCCUa -3'
miRNA:   3'- uGUGCUUUgCUCUUUAucugCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 8349 0.66 0.999888
Target:  5'- --cCGAGGCGGGu-GUGGaggucuGCGUUCCCg -3'
miRNA:   3'- uguGCUUUGCUCuuUAUC------UGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 9056 0.75 0.926274
Target:  5'- uUugGAAACGAGcGAacGACGUCUCCu -3'
miRNA:   3'- uGugCUUUGCUCuUUauCUGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 10810 0.68 0.999319
Target:  5'- -uGCGAGACGcguucgauccaucccGGGcggacuucGGUcAGGCGUCCCCg -3'
miRNA:   3'- ugUGCUUUGC---------------UCU--------UUA-UCUGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 11258 0.73 0.975154
Target:  5'- gUACGuuaaggauaAGACGGGAGG-AGACGUCCCa -3'
miRNA:   3'- uGUGC---------UUUGCUCUUUaUCUGCAGGGg -5'
1205 3' -47.4 NC_001132.2 + 11452 1.14 0.012002
Target:  5'- aACACGAAACGAGAAAUAGACGUCCCCg -3'
miRNA:   3'- -UGUGCUUUGCUCUUUAUCUGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 11575 0.71 0.989203
Target:  5'- uGCGCGuguCGAGAuaucggacuAUGGACGUUCCg -3'
miRNA:   3'- -UGUGCuuuGCUCUu--------UAUCUGCAGGGg -5'
1205 3' -47.4 NC_001132.2 + 12258 0.66 0.999914
Target:  5'- gGCAacccgGAAugGAGGAAUGGcACGacgCUCCu -3'
miRNA:   3'- -UGUg----CUUugCUCUUUAUC-UGCa--GGGG- -5'
1205 3' -47.4 NC_001132.2 + 21444 0.68 0.999401
Target:  5'- gACACGAAGCGAuGAGUuuuauacgacAGGCGauccguUCCUCg -3'
miRNA:   3'- -UGUGCUUUGCUcUUUA----------UCUGC------AGGGG- -5'
1205 3' -47.4 NC_001132.2 + 22133 0.66 0.999914
Target:  5'- -aACGuc-CG-GAAAUAGACGUauaCCCg -3'
miRNA:   3'- ugUGCuuuGCuCUUUAUCUGCAg--GGG- -5'
1205 3' -47.4 NC_001132.2 + 23980 0.67 0.999695
Target:  5'- --gUGAGACGAuGGAUgcGGACGUCgCCg -3'
miRNA:   3'- uguGCUUUGCUcUUUA--UCUGCAGgGG- -5'
1205 3' -47.4 NC_001132.2 + 27939 0.68 0.998888
Target:  5'- cUACuAGACGAGA--UAGACGUCgCUa -3'
miRNA:   3'- uGUGcUUUGCUCUuuAUCUGCAGgGG- -5'
1205 3' -47.4 NC_001132.2 + 29544 0.67 0.999519
Target:  5'- -uGCGAGACGAcGAcc----CGUCCCCg -3'
miRNA:   3'- ugUGCUUUGCU-CUuuaucuGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 34504 0.81 0.674617
Target:  5'- -aGCGAAACGAGAcg-AGACGUUUCCa -3'
miRNA:   3'- ugUGCUUUGCUCUuuaUCUGCAGGGG- -5'
1205 3' -47.4 NC_001132.2 + 39913 0.69 0.998367
Target:  5'- uACACGGuauccGACGAGuuacUGGACGUUCUa -3'
miRNA:   3'- -UGUGCU-----UUGCUCuuu-AUCUGCAGGGg -5'
1205 3' -47.4 NC_001132.2 + 43114 0.7 0.996699
Target:  5'- uACACGGAACGAu---UGGAU-UCCCCc -3'
miRNA:   3'- -UGUGCUUUGCUcuuuAUCUGcAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.