miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12051 3' -51.2 NC_003298.1 + 20092 0.68 0.689674
Target:  5'- aCGUUGAGUUUGaACCgCUGGGUGaCAc -3'
miRNA:   3'- gGUAACUCAGAC-UGG-GAUCUACgGUa -5'
12051 3' -51.2 NC_003298.1 + 1038 0.69 0.631155
Target:  5'- uCCGUUGAGUCaaccgauuUGACC--GGGUGCUAUc -3'
miRNA:   3'- -GGUAACUCAG--------ACUGGgaUCUACGGUA- -5'
12051 3' -51.2 NC_003298.1 + 22727 0.69 0.607667
Target:  5'- aUAUUGGGUCUGACCgCUuguaGCCAUu -3'
miRNA:   3'- gGUAACUCAGACUGG-GAucuaCGGUA- -5'
12051 3' -51.2 NC_003298.1 + 35228 0.93 0.018218
Target:  5'- uCCAUUGAGUCUGA-CCUAGAUGCCAUc -3'
miRNA:   3'- -GGUAACUCAGACUgGGAUCUACGGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.