miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12057 5' -47.8 NC_003298.1 + 27320 0.67 0.923401
Target:  5'- aGUcagCACcACCAGCACggcuagaaGCGUCAcUGAg -3'
miRNA:   3'- cCAa--GUGuUGGUCGUG--------UGCAGUuACU- -5'
12057 5' -47.8 NC_003298.1 + 3977 0.67 0.916877
Target:  5'- aGGUUCACAGCCuuguagacuucuGGCAUguaaACGUCu---- -3'
miRNA:   3'- -CCAAGUGUUGG------------UCGUG----UGCAGuuacu -5'
12057 5' -47.8 NC_003298.1 + 2602 0.68 0.902868
Target:  5'- aGGUagCGCGuaaAGCACGCGUCAaGUGGc -3'
miRNA:   3'- -CCAa-GUGUuggUCGUGUGCAGU-UACU- -5'
12057 5' -47.8 NC_003298.1 + 23544 1.14 0.002024
Target:  5'- cGGUUCACAACCAGCACACGUCAAUGAg -3'
miRNA:   3'- -CCAAGUGUUGGUCGUGUGCAGUUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.