miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1206 5' -54.7 NC_001132.2 + 10687 1.11 0.00279
Target:  5'- cGAGCGACACAGCCAUCACCCUCAUCCc -3'
miRNA:   3'- -CUCGCUGUGUCGGUAGUGGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 5531 0.72 0.655094
Target:  5'- aAGCGACACGGaaccuuguaCAaaGCCCUCAUUCg -3'
miRNA:   3'- cUCGCUGUGUCg--------GUagUGGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 8073 0.7 0.774664
Target:  5'- cAGCGGUACcaugAGCgaCAUCACCCUCGUCg -3'
miRNA:   3'- cUCGCUGUG----UCG--GUAGUGGGAGUAGg -5'
1206 5' -54.7 NC_001132.2 + 47851 0.69 0.836875
Target:  5'- aGAGCGACguccguagAC-GCCGUacgCACCCUCAUUUc -3'
miRNA:   3'- -CUCGCUG--------UGuCGGUA---GUGGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 152645 0.69 0.836875
Target:  5'- uGGgGACggACAGUUcguUCACCUUCGUCCa -3'
miRNA:   3'- cUCgCUG--UGUCGGu--AGUGGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 59119 0.69 0.856214
Target:  5'- -cGUGACACgGGCCcgCGuuuuuaauagacaggUCCUCGUCCa -3'
miRNA:   3'- cuCGCUGUG-UCGGuaGU---------------GGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 129830 0.68 0.860867
Target:  5'- --cCGACugGGCCGUaaaccgaACCgUCGUCCu -3'
miRNA:   3'- cucGCUGugUCGGUAg------UGGgAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 135976 0.68 0.867705
Target:  5'- aGGUGACuaagacgACGGCgCAUaCAUCCUCGUCUa -3'
miRNA:   3'- cUCGCUG-------UGUCG-GUA-GUGGGAGUAGG- -5'
1206 5' -54.7 NC_001132.2 + 13238 0.68 0.875825
Target:  5'- uGAGCGACguaACAGUCGUCGCCggggaCUCGa-- -3'
miRNA:   3'- -CUCGCUG---UGUCGGUAGUGG-----GAGUagg -5'
1206 5' -54.7 NC_001132.2 + 127300 0.68 0.896593
Target:  5'- --uCGACGCGGUaagucCGCCCUCAUCg -3'
miRNA:   3'- cucGCUGUGUCGgua--GUGGGAGUAGg -5'
1206 5' -54.7 NC_001132.2 + 17972 0.66 0.945638
Target:  5'- cGAGCaGGaaguugcCGCAGCUAUCGCCgCcaugugcgUCAUCCu -3'
miRNA:   3'- -CUCG-CU-------GUGUCGGUAGUGG-G--------AGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.