miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1207 5' -53.1 NC_001132.2 + 120329 0.66 0.979679
Target:  5'- uCGGCcc-AACGGGUcguguuagacacgGuCGUGUACGCCu -3'
miRNA:   3'- -GCCGcauUUGCCUA-------------C-GCACAUGCGGu -5'
1207 5' -53.1 NC_001132.2 + 58087 0.67 0.969545
Target:  5'- aCGGCGgaGAUGcAUGUGUuaucgugagugcGUACGCCGu -3'
miRNA:   3'- -GCCGCauUUGCcUACGCA------------CAUGCGGU- -5'
1207 5' -53.1 NC_001132.2 + 2771 0.67 0.959608
Target:  5'- gCGuGCGUAuACGGggGCG-GUGCcCCGu -3'
miRNA:   3'- -GC-CGCAUuUGCCuaCGCaCAUGcGGU- -5'
1207 5' -53.1 NC_001132.2 + 9144 0.67 0.955849
Target:  5'- aGGCGgugccGugGGGUGUGUGUACa--- -3'
miRNA:   3'- gCCGCau---UugCCUACGCACAUGcggu -5'
1207 5' -53.1 NC_001132.2 + 6548 0.68 0.94179
Target:  5'- cCGGaCGaGGAUGGAucuauacggguaugUGuCGUGUACGCCu -3'
miRNA:   3'- -GCC-GCaUUUGCCU--------------AC-GCACAUGCGGu -5'
1207 5' -53.1 NC_001132.2 + 160086 0.7 0.870827
Target:  5'- gGGUGagggaaagAGACGGAgGCGUGUACcCCAa -3'
miRNA:   3'- gCCGCa-------UUUGCCUaCGCACAUGcGGU- -5'
1207 5' -53.1 NC_001132.2 + 7150 1.09 0.00623
Target:  5'- gCGGCGUAAACGGAUGCGUGUACGCCAu -3'
miRNA:   3'- -GCCGCAUUUGCCUACGCACAUGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.