Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 1209 | 3' | -46.2 | NC_001132.2 | + | 7916 | 0.66 | 0.999987 |
|
Target: 5'- ---cUUCGCAccgUGCUCCGcu-ACAUGUa -3' miRNA: 3'- gucaAAGCGU---AUGAGGCauuUGUGCA- -5' |
|||||||
| 1209 | 3' | -46.2 | NC_001132.2 | + | 11335 | 0.66 | 0.999966 |
|
Target: 5'- gAGUUcuccUCGCGauucaaUAcCUCCGUGcAACGCGUg -3' miRNA: 3'- gUCAA----AGCGU------AU-GAGGCAU-UUGUGCA- -5' |
|||||||
| 1209 | 3' | -46.2 | NC_001132.2 | + | 62486 | 0.68 | 0.999766 |
|
Target: 5'- -cGUUUUGCAUaagGCUCCGUccauGGCACc- -3' miRNA: 3'- guCAAAGCGUA---UGAGGCAu---UUGUGca -5' |
|||||||
| 1209 | 3' | -46.2 | NC_001132.2 | + | 111681 | 0.69 | 0.999259 |
|
Target: 5'- cCAGUUUUGaGUACgCCGUGgacuuGACACGUu -3' miRNA: 3'- -GUCAAAGCgUAUGaGGCAU-----UUGUGCA- -5' |
|||||||
| 1209 | 3' | -46.2 | NC_001132.2 | + | 4288 | 1.08 | 0.030972 |
|
Target: 5'- aCAGUUUCGCAUACUCCGUAAACACGUu -3' miRNA: 3'- -GUCAAAGCGUAUGAGGCAUUUGUGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home