miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12095 3' -57.7 NC_003309.1 + 52724 0.66 0.561329
Target:  5'- aGuuGGCGggCCAGcCCGGCuaccGGCUCc -3'
miRNA:   3'- gUggCUGUuaGGUCaGGCCG----CCGAGc -5'
12095 3' -57.7 NC_003309.1 + 31560 0.67 0.550749
Target:  5'- cCACCGGCAAUUUucGUacgcaCGGCGGCa-- -3'
miRNA:   3'- -GUGGCUGUUAGGu-CAg----GCCGCCGagc -5'
12095 3' -57.7 NC_003309.1 + 9574 0.67 0.509116
Target:  5'- aCGCCGAacg-CCGcUgCGGCGGCUUGu -3'
miRNA:   3'- -GUGGCUguuaGGUcAgGCCGCCGAGC- -5'
12095 3' -57.7 NC_003309.1 + 47397 0.67 0.509116
Target:  5'- -gUCGACGGgcaaCAGUCgGGCaGCUCGa -3'
miRNA:   3'- guGGCUGUUag--GUCAGgCCGcCGAGC- -5'
12095 3' -57.7 NC_003309.1 + 18692 0.68 0.48779
Target:  5'- gGCCGcCGAUCCGGcggCCGGCcuucuuaGGgUCGg -3'
miRNA:   3'- gUGGCuGUUAGGUCa--GGCCG-------CCgAGC- -5'
12095 3' -57.7 NC_003309.1 + 32061 0.68 0.47878
Target:  5'- aCGCCGaggcgcGCAAUgCAcgcuucgCUGGCGGCUCGg -3'
miRNA:   3'- -GUGGC------UGUUAgGUca-----GGCCGCCGAGC- -5'
12095 3' -57.7 NC_003309.1 + 11494 0.74 0.197473
Target:  5'- uCGCCGuguCGAUCgcg-CCGGCGGCUCGa -3'
miRNA:   3'- -GUGGCu--GUUAGgucaGGCCGCCGAGC- -5'
12095 3' -57.7 NC_003309.1 + 256 1.08 0.000678
Target:  5'- uCACCGACAAUCCAGUCCGGCGGCUCGa -3'
miRNA:   3'- -GUGGCUGUUAGGUCAGGCCGCCGAGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.