Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12096 | 3' | -53.5 | NC_003309.1 | + | 25666 | 0.66 | 0.785472 |
Target: 5'- cGCGCAGGUUGCGCGaaacgcacUGCUgcuugaggcuuuGGCccgAUGCAc -3' miRNA: 3'- -UGCGUUCAACGUGU--------AUGG------------CCG---UGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 45295 | 0.66 | 0.775239 |
Target: 5'- cGCGCGAcaUGC-CuUGCCGGUACaGCGg -3' miRNA: 3'- -UGCGUUcaACGuGuAUGGCCGUG-CGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 48956 | 0.66 | 0.775239 |
Target: 5'- -aGCGGGUUaagacgGCACAcacCCGGCacACGCAg -3' miRNA: 3'- ugCGUUCAA------CGUGUau-GGCCG--UGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 22019 | 0.66 | 0.764851 |
Target: 5'- -aGCcGGgcgUGCACGUcaggACCGGCucCGCGu -3' miRNA: 3'- ugCGuUCa--ACGUGUA----UGGCCGu-GCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 19303 | 0.66 | 0.754318 |
Target: 5'- cACGCcga--GCGCGUuuUCGGCGCGCAc -3' miRNA: 3'- -UGCGuucaaCGUGUAu-GGCCGUGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 27956 | 0.66 | 0.751132 |
Target: 5'- cCGC-AGUUGCAUcgcagaugcgucgcgGCgGGCACGCGc -3' miRNA: 3'- uGCGuUCAACGUGua-------------UGgCCGUGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 23277 | 0.66 | 0.743653 |
Target: 5'- uUGCAGGUaGUagaaGCGUGCCG-CACGCu -3' miRNA: 3'- uGCGUUCAaCG----UGUAUGGCcGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 18209 | 0.67 | 0.73287 |
Target: 5'- cACGC-AGUUGCACGUaaaGCgCGGCuccuUGCc -3' miRNA: 3'- -UGCGuUCAACGUGUA---UG-GCCGu---GCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 22456 | 0.67 | 0.73287 |
Target: 5'- uGCGCGGcgaucGCACGcUGCCGGCgucgaGCGCGg -3' miRNA: 3'- -UGCGUUcaa--CGUGU-AUGGCCG-----UGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 22420 | 0.67 | 0.69993 |
Target: 5'- cGCGCGAGaucUUGCccaacgcuucgGCAUGCCGcuGCGCGUc -3' miRNA: 3'- -UGCGUUC---AACG-----------UGUAUGGC--CGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 37311 | 0.68 | 0.682085 |
Target: 5'- cGCGCGAucgUGCGCGacgcccugaaucucGCCGGCGCGUc -3' miRNA: 3'- -UGCGUUca-ACGUGUa-------------UGGCCGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 5159 | 0.68 | 0.666363 |
Target: 5'- -gGCGAGcUGCGCGUcGCCG-CGCGCc -3' miRNA: 3'- ugCGUUCaACGUGUA-UGGCcGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 45376 | 0.68 | 0.666363 |
Target: 5'- uGCGCucgacgUGCuCGggaaACCGGCGCGCGa -3' miRNA: 3'- -UGCGuuca--ACGuGUa---UGGCCGUGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 12150 | 0.68 | 0.643796 |
Target: 5'- gACGCGcAGUUGCGCGauccgcUGCCGgauguugucgaGCAUGCGc -3' miRNA: 3'- -UGCGU-UCAACGUGU------AUGGC-----------CGUGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 39274 | 0.69 | 0.598612 |
Target: 5'- cGCGCAugcGUUGCGuc-GCCaGCGCGCAg -3' miRNA: 3'- -UGCGUu--CAACGUguaUGGcCGUGCGU- -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 5133 | 0.7 | 0.510234 |
Target: 5'- cCGCGAGc-GCACGUACCauGCGCGCc -3' miRNA: 3'- uGCGUUCaaCGUGUAUGGc-CGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 27180 | 0.74 | 0.304414 |
Target: 5'- cGCGCGuGUUGUAg--ACCGGCGCGCc -3' miRNA: 3'- -UGCGUuCAACGUguaUGGCCGUGCGu -5' |
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12096 | 3' | -53.5 | NC_003309.1 | + | 690 | 1.09 | 0.001308 |
Target: 5'- cACGCAAGUUGCACAUACCGGCACGCAg -3' miRNA: 3'- -UGCGUUCAACGUGUAUGGCCGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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