Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12097 | 5' | -56.9 | NC_003309.1 | + | 992 | 1.07 | 0.000926 |
Target: 5'- gGACGAACAUGCCGAUGCCGACGCCCGc -3' miRNA: 3'- -CUGCUUGUACGGCUACGGCUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 32203 | 0.72 | 0.311522 |
Target: 5'- aGCGA--GUGCCGAUcaggucGCCGACGCCg- -3' miRNA: 3'- cUGCUugUACGGCUA------CGGCUGCGGgc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 36239 | 0.7 | 0.412663 |
Target: 5'- gGACGAGCAcuCCGAUcGCCaGuauCGCCCGu -3' miRNA: 3'- -CUGCUUGUacGGCUA-CGG-Cu--GCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 1307 | 0.69 | 0.421963 |
Target: 5'- uGAUGAACAUGagCGGcUGUCGACGCgCGc -3' miRNA: 3'- -CUGCUUGUACg-GCU-ACGGCUGCGgGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 33656 | 0.69 | 0.421963 |
Target: 5'- aGCGAACGgcugGCUGAgGCCGGCaucgaGCCCu -3' miRNA: 3'- cUGCUUGUa---CGGCUaCGGCUG-----CGGGc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 34533 | 0.69 | 0.421963 |
Target: 5'- aGCGAGCAcccGUCGAUGUgGGCGgCCGu -3' miRNA: 3'- cUGCUUGUa--CGGCUACGgCUGCgGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 45569 | 0.69 | 0.421963 |
Target: 5'- gGACGAGCAUGCCGucGCagguucuGCGUCCGc -3' miRNA: 3'- -CUGCUUGUACGGCuaCGgc-----UGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 16099 | 0.69 | 0.421963 |
Target: 5'- cGCGAuccgcuucGCucgGCUG-UGCCGACGCCCc -3' miRNA: 3'- cUGCU--------UGua-CGGCuACGGCUGCGGGc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 2400 | 0.69 | 0.450602 |
Target: 5'- cGAUGAgcccgaucgGCAaGCUGAUcaGCaCGACGCCCGu -3' miRNA: 3'- -CUGCU---------UGUaCGGCUA--CG-GCUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 31942 | 0.69 | 0.450602 |
Target: 5'- cACGAACAguucuucGCCGcccgcgGCCGGCGCCa- -3' miRNA: 3'- cUGCUUGUa------CGGCua----CGGCUGCGGgc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 36564 | 0.69 | 0.450602 |
Target: 5'- -uCGAACAUcGUCGcgGCCGGCGCgaUCGa -3' miRNA: 3'- cuGCUUGUA-CGGCuaCGGCUGCG--GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17908 | 0.69 | 0.470276 |
Target: 5'- aACGAACGUGCguCGAacgucaUGCCGACGagcgCCGu -3' miRNA: 3'- cUGCUUGUACG--GCU------ACGGCUGCg---GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 4312 | 0.69 | 0.470276 |
Target: 5'- uGGCGAugAcGCCGAUcgacCCuACGCCCGa -3' miRNA: 3'- -CUGCUugUaCGGCUAc---GGcUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17016 | 0.68 | 0.479271 |
Target: 5'- gGACuGAGCAucUGCaCGAUGCCGcccaaugccaucgACGCaCCGa -3' miRNA: 3'- -CUG-CUUGU--ACG-GCUACGGC-------------UGCG-GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 8186 | 0.68 | 0.489363 |
Target: 5'- cGACGAACAccagaucUGCCGc-GUCGAgGUCCGu -3' miRNA: 3'- -CUGCUUGU-------ACGGCuaCGGCUgCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 15234 | 0.68 | 0.499554 |
Target: 5'- cGACuGAAgAUGCCGAUgaaagcgcagcacGUCGGCGCCg- -3' miRNA: 3'- -CUG-CUUgUACGGCUA-------------CGGCUGCGGgc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 27329 | 0.68 | 0.500578 |
Target: 5'- cGGCGAAC-UGCCGAUGCaucaGAcuggauCGCCa- -3' miRNA: 3'- -CUGCUUGuACGGCUACGg---CU------GCGGgc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 16772 | 0.68 | 0.500578 |
Target: 5'- cGGCGAACGUgagGCCGccGUCG-CGCgCCGa -3' miRNA: 3'- -CUGCUUGUA---CGGCuaCGGCuGCG-GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 22403 | 0.68 | 0.510871 |
Target: 5'- aACGcuucGGCAUGCCGcUGCgCGucgaACGCCCGc -3' miRNA: 3'- cUGC----UUGUACGGCuACG-GC----UGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 44154 | 0.68 | 0.521251 |
Target: 5'- cGACGAGuccgcuuuuCGUGCggUGAUGCuCGuCGCCCGc -3' miRNA: 3'- -CUGCUU---------GUACG--GCUACG-GCuGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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