Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12097 | 5' | -56.9 | NC_003309.1 | + | 992 | 1.07 | 0.000926 |
Target: 5'- gGACGAACAUGCCGAUGCCGACGCCCGc -3' miRNA: 3'- -CUGCUUGUACGGCUACGGCUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 1307 | 0.69 | 0.421963 |
Target: 5'- uGAUGAACAUGagCGGcUGUCGACGCgCGc -3' miRNA: 3'- -CUGCUUGUACg-GCU-ACGGCUGCGgGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 1377 | 0.66 | 0.595805 |
Target: 5'- -uCGAGCAUuUCGAucaccUGCCGGCGCuuGu -3' miRNA: 3'- cuGCUUGUAcGGCU-----ACGGCUGCGggC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 2400 | 0.69 | 0.450602 |
Target: 5'- cGAUGAgcccgaucgGCAaGCUGAUcaGCaCGACGCCCGu -3' miRNA: 3'- -CUGCU---------UGUaCGGCUA--CG-GCUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 4312 | 0.69 | 0.470276 |
Target: 5'- uGGCGAugAcGCCGAUcgacCCuACGCCCGa -3' miRNA: 3'- -CUGCUugUaCGGCUAc---GGcUGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 5066 | 0.67 | 0.563516 |
Target: 5'- cACGGGCGcggcgGCCGGUGCCGcgacgGCGgUCGg -3' miRNA: 3'- cUGCUUGUa----CGGCUACGGC-----UGCgGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 8186 | 0.68 | 0.489363 |
Target: 5'- cGACGAACAccagaucUGCCGc-GUCGAgGUCCGu -3' miRNA: 3'- -CUGCUUGU-------ACGGCuaCGGCUgCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 8944 | 0.66 | 0.617494 |
Target: 5'- cGACGAugcgguUGUGCaCGggGCCGAaCGCCUc -3' miRNA: 3'- -CUGCUu-----GUACG-GCuaCGGCU-GCGGGc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 10332 | 0.68 | 0.530662 |
Target: 5'- cGACGAGCGcucGCCGGgcGCCGAcccacgcugucgcCGCCUGc -3' miRNA: 3'- -CUGCUUGUa--CGGCUa-CGGCU-------------GCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 11502 | 0.66 | 0.639233 |
Target: 5'- cGCGAGgcucgcCGUGUCGAUcgcGCCGGCgGCUCGa -3' miRNA: 3'- cUGCUU------GUACGGCUA---CGGCUG-CGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 15234 | 0.68 | 0.499554 |
Target: 5'- cGACuGAAgAUGCCGAUgaaagcgcagcacGUCGGCGCCg- -3' miRNA: 3'- -CUG-CUUgUACGGCUA-------------CGGCUGCGGgc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 16099 | 0.69 | 0.421963 |
Target: 5'- cGCGAuccgcuucGCucgGCUG-UGCCGACGCCCc -3' miRNA: 3'- cUGCU--------UGua-CGGCuACGGCUGCGGGc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 16772 | 0.68 | 0.500578 |
Target: 5'- cGGCGAACGUgagGCCGccGUCG-CGCgCCGa -3' miRNA: 3'- -CUGCUUGUA---CGGCuaCGGCuGCG-GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17016 | 0.68 | 0.479271 |
Target: 5'- gGACuGAGCAucUGCaCGAUGCCGcccaaugccaucgACGCaCCGa -3' miRNA: 3'- -CUG-CUUGU--ACG-GCUACGGC-------------UGCG-GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17061 | 0.66 | 0.617494 |
Target: 5'- uACG-ACGUGCCGuUGuuGGCcguccccgcgaGCCCGg -3' miRNA: 3'- cUGCuUGUACGGCuACggCUG-----------CGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17507 | 0.66 | 0.650099 |
Target: 5'- gGACGucagcGGCAcGCCGAcGCCGgccucACGCUCGa -3' miRNA: 3'- -CUGC-----UUGUaCGGCUaCGGC-----UGCGGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 17908 | 0.69 | 0.470276 |
Target: 5'- aACGAACGUGCguCGAacgucaUGCCGACGagcgCCGu -3' miRNA: 3'- cUGCUUGUACG--GCU------ACGGCUGCg---GGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 18701 | 0.67 | 0.542247 |
Target: 5'- cGCGGAUAcggccGCCGAU-CCGGCGgCCGg -3' miRNA: 3'- cUGCUUGUa----CGGCUAcGGCUGCgGGC- -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 20152 | 0.66 | 0.639233 |
Target: 5'- cGACGAc---GCCGuuuucguUGUCGAUGCCCa -3' miRNA: 3'- -CUGCUuguaCGGCu------ACGGCUGCGGGc -5' |
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12097 | 5' | -56.9 | NC_003309.1 | + | 22403 | 0.68 | 0.510871 |
Target: 5'- aACGcuucGGCAUGCCGcUGCgCGucgaACGCCCGc -3' miRNA: 3'- cUGC----UUGUACGGCuACG-GC----UGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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