miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12101 5' -58.1 NC_003309.1 + 5064 0.66 0.585275
Target:  5'- -cGGGCGCGgcggcCGGUGC-CgCGAcgGCGGu -3'
miRNA:   3'- guUCCGUGCa----GCCGCGaG-GCUa-CGCC- -5'
12101 5' -58.1 NC_003309.1 + 17747 0.66 0.553498
Target:  5'- ---cGCGCG-CGGCaGCucgaUCCGAUGCGa -3'
miRNA:   3'- guucCGUGCaGCCG-CG----AGGCUACGCc -5'
12101 5' -58.1 NC_003309.1 + 11770 0.67 0.505868
Target:  5'- ----aCGCGUCGGCGCgcCCGGcgaucagccccgccaUGCGGa -3'
miRNA:   3'- guuccGUGCAGCCGCGa-GGCU---------------ACGCC- -5'
12101 5' -58.1 NC_003309.1 + 7764 0.68 0.433309
Target:  5'- --cGGCGC--CGGCGCcuucgCCGGUGCGa -3'
miRNA:   3'- guuCCGUGcaGCCGCGa----GGCUACGCc -5'
12101 5' -58.1 NC_003309.1 + 3961 1.09 0.000577
Target:  5'- cCAAGGCACGUCGGCGCUCCGAUGCGGc -3'
miRNA:   3'- -GUUCCGUGCAGCCGCGAGGCUACGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.