Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 3953 | 0.66 | 0.720783 |
|
Target: 5'- -cGUCGGCgcu-CCGAUGcGGCAGCc -3' miRNA: 3'- acUAGCCGaaguGGUUGCuCCGUCGc -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 4202 | 1.08 | 0.001182 |
|
Target: 5'- gUGAUCGGCUUCACCAACGAGGCAGCGc -3' miRNA: 3'- -ACUAGCCGAAGUGGUUGCUCCGUCGC- -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 4642 | 0.71 | 0.431076 |
|
Target: 5'- cGAUCGGCUcgggaggCGCgAACuucGGCAGCGa -3' miRNA: 3'- aCUAGCCGAa------GUGgUUGcu-CCGUCGC- -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 13985 | 0.71 | 0.44084 |
|
Target: 5'- gGAauUCGGCcgCACCGACGAcGCGGgCGg -3' miRNA: 3'- aCU--AGCCGaaGUGGUUGCUcCGUC-GC- -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 16925 | 0.7 | 0.481099 |
|
Target: 5'- cGAUCGcGCcgaCAgCGACGAGuGCGGCGc -3' miRNA: 3'- aCUAGC-CGaa-GUgGUUGCUC-CGUCGC- -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 22488 | 0.71 | 0.42144 |
|
Target: 5'- cGA-CGGCggccacCGCCGACGcGGCGGCa -3' miRNA: 3'- aCUaGCCGaa----GUGGUUGCuCCGUCGc -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 37926 | 0.67 | 0.688126 |
|
Target: 5'- aGcgCGGCcuu-UCGGCGGGGCGGCc -3' miRNA: 3'- aCuaGCCGaaguGGUUGCUCCGUCGc -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 40579 | 0.73 | 0.349269 |
|
Target: 5'- cGGUCGGCUcuacgguguaGCCGagaaACGGGGUAGCGc -3' miRNA: 3'- aCUAGCCGAag--------UGGU----UGCUCCGUCGC- -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 42362 | 0.76 | 0.203658 |
|
Target: 5'- aGAUCacGCgaaucuagUCGCCAACGAGGCAGUa -3' miRNA: 3'- aCUAGc-CGa-------AGUGGUUGCUCCGUCGc -5' |
|||||||
| 12102 | 3' | -54.7 | NC_003309.1 | + | 45229 | 0.66 | 0.699082 |
|
Target: 5'- -cGUCGGCggCACUccagcgcagAAUGGGGCGGUa -3' miRNA: 3'- acUAGCCGaaGUGG---------UUGCUCCGUCGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home