miRNA display CGI


Results 41 - 60 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 27180 0.66 0.401448
Target:  5'- cGCGCGuguuguagaCCGgCGCGccGGCGUugacCGUGCCGc -3'
miRNA:   3'- -CGCGC---------GGCgGCGC--UCGCGu---GCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 34871 0.66 0.410303
Target:  5'- -aGCGCCGCCaacGUGAacgaGCACGUcaucACCGa -3'
miRNA:   3'- cgCGCGGCGG---CGCUcg--CGUGCA----UGGU- -5'
12103 5' -61.8 NC_003309.1 + 9709 0.66 0.410303
Target:  5'- aGCG-GuuGCCGUGugucGCGCGCGaUGCgCAg -3'
miRNA:   3'- -CGCgCggCGGCGCu---CGCGUGC-AUG-GU- -5'
12103 5' -61.8 NC_003309.1 + 10879 0.66 0.410303
Target:  5'- cGCGCGuuCCGCuCGCucGCGCgccuGCGUGgCAa -3'
miRNA:   3'- -CGCGC--GGCG-GCGcuCGCG----UGCAUgGU- -5'
12103 5' -61.8 NC_003309.1 + 31411 0.66 0.384105
Target:  5'- aGUGCGCaGCCGCcGGCGUGcCGUuCCu -3'
miRNA:   3'- -CGCGCGgCGGCGcUCGCGU-GCAuGGu -5'
12103 5' -61.8 NC_003309.1 + 19956 0.66 0.375623
Target:  5'- cGCGCGauCCGCUuCGAcGCGCGCG-AUCGc -3'
miRNA:   3'- -CGCGC--GGCGGcGCU-CGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 10743 0.67 0.312428
Target:  5'- -aGCGCCGUccgucgcugcugCGCGAGCGCgaGCGaaGCCu -3'
miRNA:   3'- cgCGCGGCG------------GCGCUCGCG--UGCa-UGGu -5'
12103 5' -61.8 NC_003309.1 + 50022 0.67 0.312428
Target:  5'- uCGUGCgGaCCGCGcucaccacggcAGCGCACuGUGCCc -3'
miRNA:   3'- cGCGCGgC-GGCGC-----------UCGCGUG-CAUGGu -5'
12103 5' -61.8 NC_003309.1 + 13109 0.67 0.319118
Target:  5'- uGCGCGCaCGCCcggcuGCGAcaccacuGCGgCGCGgACCAc -3'
miRNA:   3'- -CGCGCG-GCGG-----CGCU-------CGC-GUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 11226 0.67 0.319867
Target:  5'- uGCGCGUCGuCUGCc-GCGCGCGacGCCu -3'
miRNA:   3'- -CGCGCGGC-GGCGcuCGCGUGCa-UGGu -5'
12103 5' -61.8 NC_003309.1 + 46659 0.67 0.342978
Target:  5'- cCGgGCCGgCGCGuaauGCGCAgCGcACCGg -3'
miRNA:   3'- cGCgCGGCgGCGCu---CGCGU-GCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 19020 0.67 0.350944
Target:  5'- uGCGCGCCGUCGuCGAucGCcGCAUacuUGCCc -3'
miRNA:   3'- -CGCGCGGCGGC-GCU--CG-CGUGc--AUGGu -5'
12103 5' -61.8 NC_003309.1 + 18412 0.67 0.350944
Target:  5'- aGCGCGaCCGUguagCGCGucuuGCGCuCGcUGCCGa -3'
miRNA:   3'- -CGCGC-GGCG----GCGCu---CGCGuGC-AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 3566 0.67 0.350944
Target:  5'- gGCGC-CCGaCCGCGuaGGCG-GCGUAUCGc -3'
miRNA:   3'- -CGCGcGGC-GGCGC--UCGCgUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 11549 0.66 0.359041
Target:  5'- cGUGCGgccacguucaUCGCCGUGAGUGCuuGCGcGCCc -3'
miRNA:   3'- -CGCGC----------GGCGGCGCUCGCG--UGCaUGGu -5'
12103 5' -61.8 NC_003309.1 + 9258 0.66 0.359041
Target:  5'- --cCGCCGUCGCGGGCuCGCcggACCAu -3'
miRNA:   3'- cgcGCGGCGGCGCUCGcGUGca-UGGU- -5'
12103 5' -61.8 NC_003309.1 + 45257 0.66 0.366439
Target:  5'- aUGCcgGCCGCCGCGuGCGCcucgaauacgucgGCGgcacuCCAg -3'
miRNA:   3'- cGCG--CGGCGGCGCuCGCG-------------UGCau---GGU- -5'
12103 5' -61.8 NC_003309.1 + 10292 0.66 0.367267
Target:  5'- cUGCGUCGCCGCGAcuGCGgAU-UGCCc -3'
miRNA:   3'- cGCGCGGCGGCGCU--CGCgUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 44924 0.66 0.375623
Target:  5'- cGUGCgGCCGCCuCGGGCGUccaGCgGUACa- -3'
miRNA:   3'- -CGCG-CGGCGGcGCUCGCG---UG-CAUGgu -5'
12103 5' -61.8 NC_003309.1 + 7830 0.66 0.410303
Target:  5'- aCG-GCCGCCagucagcccgGCGAGCGCcaugucgaGCGcGCCAu -3'
miRNA:   3'- cGCgCGGCGG----------CGCUCGCG--------UGCaUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.